View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7719_low_10 (Length: 489)
Name: NF7719_low_10
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 2497734 - 2497288
Alignment:
| Q |
18 |
catcgaaagttatctttctaggtgatcggttcgaaccttctgactgtttaaaacgaagtcattttggaggcttgtgagcaatagagagggcctataaagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2497734 |
catcgaaagttatctttctaggtgatcggttcgaaccttctgactgtttaaaacgaagtcattttggaggcttgtgagcaatagagagggcctataaagc |
2497635 |
T |
|
| Q |
118 |
agttttcaaattatagtttaactttggcccacctctagtttggctagtgtctagctattaagtagtagttttcaaggctgatatattctaatttgagaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2497634 |
agttttcaaattatagtttaactttggc----------------tagtgtctagctattaattagt---tttcaaggctgatatattctaatttgagaat |
2497554 |
T |
|
| Q |
218 |
ttctttttccaccctcctt-gcgtcttcccgcgcccttaaaaatttcaaaaattcccttgaattttaggattttataatctaaaatgattttttcctcta |
316 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2497553 |
ttctttttccaccctccttagcgtctccccgcgcccttaaaaatttcaaaaattcccttgaattttaggattttataatctaaaatgagtttttcctcta |
2497454 |
T |
|
| Q |
317 |
ttttcaaagtggcaaaaaatagcccccgtcgttttagccacggttcaaccgcgactaattgtttgnnnnnnncttcaccaattcgaattataaaatcgga |
416 |
Q |
| |
|
||||||||||| |||||| ||| | |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2497453 |
ttttcaaagtgtcaaaaattagacaccgtcgttttagccacggttcatccgcgactaattgtttgtttttttcttcaccaattcgaattataaaatcgga |
2497354 |
T |
|
| Q |
417 |
aaagacaggcacctcagattttataatccgaatactccctaaacatgcttcgaacccatcttgtgc |
482 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2497353 |
aaagacaagcacctcagattttataatccgaatactccctatacatgcttcgaacccatcttgtgc |
2497288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 3352324 - 3352274
Alignment:
| Q |
260 |
tttcaaaaattcccttgaattttaggattttataatctaaaatgatttttt |
310 |
Q |
| |
|
|||||||||| || ||||||||| ||||||||||||| |||||||| |||| |
|
|
| T |
3352324 |
tttcaaaaatgcctttgaattttcggattttataatccaaaatgatgtttt |
3352274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University