View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7719_low_11 (Length: 465)

Name: NF7719_low_11
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7719_low_11
NF7719_low_11
[»] chr8 (4 HSPs)
chr8 (1-456)||(43052593-43053064)
chr8 (277-336)||(2235643-2235702)
chr8 (246-305)||(5227528-5227587)
chr8 (241-314)||(8062317-8062390)
[»] chr1 (15 HSPs)
chr1 (238-336)||(10199395-10199493)
chr1 (241-322)||(34290224-34290305)
chr1 (238-336)||(4576790-4576888)
chr1 (238-336)||(7136985-7137083)
chr1 (238-316)||(45975675-45975753)
chr1 (246-314)||(5592694-5592762)
chr1 (281-336)||(25479609-25479664)
chr1 (235-321)||(38578509-38578596)
chr1 (256-314)||(16322852-16322910)
chr1 (245-310)||(4700079-4700144)
chr1 (235-296)||(33546480-33546541)
chr1 (235-315)||(836347-836427)
chr1 (281-333)||(16981926-16981978)
chr1 (278-338)||(20713681-20713741)
chr1 (235-336)||(38170677-38170780)
[»] chr2 (5 HSPs)
chr2 (235-322)||(39236496-39236583)
chr2 (282-336)||(43717123-43717177)
chr2 (235-304)||(1899923-1899992)
chr2 (246-314)||(7103491-7103560)
chr2 (235-316)||(12313180-12313261)
[»] chr5 (5 HSPs)
chr5 (256-336)||(17258870-17258950)
chr5 (240-316)||(41981872-41981948)
chr5 (240-336)||(2568645-2568741)
chr5 (244-300)||(6593290-6593346)
chr5 (289-333)||(41225088-41225132)
[»] chr4 (6 HSPs)
chr4 (235-300)||(3155585-3155650)
chr4 (235-316)||(25332756-25332838)
chr4 (235-300)||(53294137-53294202)
chr4 (256-300)||(20105453-20105497)
chr4 (246-314)||(33534178-33534246)
chr4 (281-321)||(55084483-55084523)
[»] chr7 (8 HSPs)
chr7 (240-336)||(752956-753052)
chr7 (228-300)||(39907778-39907850)
chr7 (12-59)||(30428223-30428270)
chr7 (235-304)||(12110342-12110411)
chr7 (235-304)||(43694589-43694658)
chr7 (238-314)||(15075094-15075170)
chr7 (282-334)||(33708432-33708484)
chr7 (12-48)||(34897645-34897681)
[»] chr3 (5 HSPs)
chr3 (282-326)||(24785290-24785334)
chr3 (241-300)||(30443881-30443940)
chr3 (249-336)||(40122740-40122827)
chr3 (281-331)||(24785233-24785283)
chr3 (240-317)||(28622005-28622082)
[»] scaffold0091 (1 HSPs)
scaffold0091 (246-305)||(6945-7004)
[»] chr6 (4 HSPs)
chr6 (241-316)||(9109258-9109333)
chr6 (285-316)||(33737774-33737805)
chr6 (281-321)||(28641751-28641791)
chr6 (231-315)||(35070475-35070559)


Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 43053064 - 43052593
Alignment:
Q  1 cgtgtttttgtttgataaagttaaaattcttatttggtggtggttgaaggttaagaaaaaaggtttcacctttgatatgaatcattggtggaataatctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43053064 cgtgtttttgtttgataaagttaaaattcttatttggtggtggttgaaggttaagaaaaaaggtttcacctttgatatgaatcattggtggaataatctc 43052965  T
Q  101 atgtcttgtttagggattaggattacttgatgtgattgttgttgattttagtttgttatatttgaga-------------------gtgcgcttttccaa 181  Q
    ||||||||||||||||||||||||| |||||||| ||||||   |||||||||||||||||||||||                   ||||||||||||||    
T  43052964 atgtcttgtttagggattaggattaattgatgtgcttgttg---attttagtttgttatatttgagactcttttgtcatgctttgagtgcgcttttccaa 43052868  T
Q  182 tttaagcactgtgttatttcatgatatatcttttggcttctccaaaaaggtttaattatttttgtataagctacaagctgtttttataaactagtttaaa 281  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43052867 tttaagcactgtgttattttatgatatatcttttggcttctccaaaaaggtttaattatttttgtataagctacaagctgtttttataaactagtttaaa 43052768  T
Q  282 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttcacattcctttactttaagtcattacaagactgacctacattgtcaa 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43052767 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttcacattcctttactttaagtcattacaagactgacctacattgtcaa 43052668  T
Q  382 gttgttagtgtttttcactaaaatgcccatacccacctggaaacccataactctctcaagacctttgatgtccat 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43052667 gttgttagtgtttttcactaaaatgcccatacccacctggaaacccataactctctcaagaccttttatgtccat 43052593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 2235702 - 2235643
Alignment:
Q  277 ttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 336  Q
    |||||||||||||| |||| |||||||| | ||||||||| ||||| |||||||||||||    
T  2235702 ttaaagagcttatggaaatgagctaaaaacgacttatgaacatgtcataaactattttca 2235643  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 5227528 - 5227587
Alignment:
Q  246 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaac 305  Q
    ||||||||| ||||||||||| ||| |||   | ||||||||||||||||||||||||||    
T  5227528 tataagctataagctgtttttgtaagctatcatgaagagcttatgaaaataagctaaaac 5227587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 8062317 - 8062390
Alignment:
Q  241 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 314  Q
    |||||||||||||| |||||||||| |||| |||  ||| |||| ||||| ||||||||| ||| || ||||||    
T  8062317 ttttgtataagctataagctgttttcataagctatcttagagagattatggaaataagctgaaaacatcttatg 8062390  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 10199493 - 10199395
Alignment:
Q  238 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 336  Q
    |||||| |||||| | | ||||| |||| |||| ||| |||| |||||||||||||||||||| ||| ||||||||||| ||||| ||| |||||||||    
T  10199493 tattttcgtataatcgataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttca 10199395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 34290224 - 34290305
Alignment:
Q  241 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtc 322  Q
    |||||||||||||| |||||||||| |||| |||  || |||| |||||||||||||||| ||| ||||||||||| |||||    
T  34290224 ttttgtataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaatatgtc 34290305  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 336
Target Start/End: Original strand, 4576790 - 4576888
Alignment:
Q  238 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 336  Q
    |||||||||| ||| || |||||||||| |||| |||  || || | |||||||||||||||| ||  |||||||| || ||||| |||||||||||||    
T  4576790 tatttttgtacaagttataagctgttttcataagctatattgaataacttatgaaaataagctgaacacaacttataaacatgtcataaactattttca 4576888  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 7137083 - 7136985
Alignment:
Q  238 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 336  Q
    ||||||||||||| ||| |||||||||| |||| |||  ||  ||| |||||||||||||||| |||  |||||||||| ||||| ||| | |||||||    
T  7137083 tatttttgtataatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaatatgtcataagcgattttca 7136985  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 45975675 - 45975753
Alignment:
Q  238 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 316  Q
    |||||||||||||||||||||||||||| |||| |||  ||  |||  ||||||||||||||| ||| || ||||||||    
T  45975675 tatttttgtataagctacaagctgttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatgaa 45975753  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 5592762 - 5592694
Alignment:
Q  246 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 314  Q
    ||||||||| ||| |||||| |||| ||||| | |||||||||||||||||||||  || |||||||||    
T  5592762 tataagctataagttgttttcataagctagtcttaagagcttatgaaaataagctggaaacaacttatg 5592694  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 336
Target Start/End: Original strand, 25479609 - 25479664
Alignment:
Q  281 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 336  Q
    |||||||||||||||||||| ||| ||||| ||||| ||||| ||| |||||||||    
T  25479609 agagcttatgaaaataagctgaaaacaactaatgaacatgtcataatctattttca 25479664  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 38578509 - 38578596
Alignment:
Q  235 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatg-aaaataagctaaaaccaacttatgaagatgt 321  Q
    |||||||||||||||||||| ||| |||||  |||||||| |   ||||| ||||| |||||||||| ||| ||||||||||| ||||    
T  38578509 aattatttttgtataagctataagttgtttacataaactattgagaagagtttatgaaaaataagctcaaaacaacttatgaatatgt 38578596  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 16322852 - 16322910
Alignment:
Q  256 aagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 314  Q
    |||||||||| |||  ||| ||| ||||||||||| ||||||||||||| |||||||||    
T  16322852 aagctgttttcataggctattttgaagagcttatggaaataagctaaaaacaacttatg 16322910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 310
Target Start/End: Complemental strand, 4700144 - 4700079
Alignment:
Q  245 gtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaact 310  Q
    |||||||||| || ||||||||||||||||   |  |||||||||||||||||||| ||| |||||    
T  4700144 gtataagctataaactgtttttataaactatcctggagagcttatgaaaataagctgaaaacaact 4700079  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 33546541 - 33546480
Alignment:
Q  235 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaata 296  Q
    |||| |||||||||| |||  ||| ||||||||||| |||| || |||||||||||||||||    
T  33546541 aattctttttgtatatgctctaagttgtttttataagctagattgaagagcttatgaaaata 33546480  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 836427 - 836347
Alignment:
Q  235 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatga 315  Q
    |||| ||||||||||||||| ||| | ||||||||| ||| || | | | || |||||||| |||||||| ||||||||||    
T  836427 aattgtttttgtataagctataagttatttttataagctatttaagaaaactaatgaaaatgagctaaaaacaacttatga 836347  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 16981978 - 16981926
Alignment:
Q  281 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattt 333  Q
    |||||||||  ||||||||||||| ||||||||| | ||||| ||||||||||    
T  16981978 agagcttatataaataagctaaaaacaacttatggacatgtcataaactattt 16981926  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 20713681 - 20713741
Alignment:
Q  278 taaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttcaca 338  Q
    ||||||||||||||||||||| ||||| || |||||| | ||||| ||| |||||| ||||    
T  20713681 taaagagcttatgaaaataagataaaaacagcttatggacatgtcgtaagctatttccaca 20713741  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 336
Target Start/End: Complemental strand, 38170780 - 38170677
Alignment:
Q  235 aattatttttgtataagctacaagctgtttttat--aaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactatt 332  Q
    ||||||||| |||||||||| ||  ||||||| |  || ||| ||| ||||||||| ||||| ||||| ||| ||||||||||| ||||| ||| || ||    
T  38170780 aattattttcgtataagctataaattgtttttttgtaagctaatttgaagagcttaggaaaacaagctgaaaacaacttatgaacatgtcataagctgtt 38170681  T
Q  333 ttca 336  Q
    ||||    
T  38170680 ttca 38170677  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 322
Target Start/End: Complemental strand, 39236583 - 39236496
Alignment:
Q  235 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtc 322  Q
    |||||||||| ||||| | | ||| |||||| ||||||||  ||||| ||||||| |||||||||||||| ||||||||||| |||||    
T  39236583 aattatttttatataaacaataagttgttttaataaactatcttaaaaagcttataaaaataagctaaaaacaacttatgaatatgtc 39236496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 43717177 - 43717123
Alignment:
Q  282 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 336  Q
    ||||||||||||||||||| ||| |||| |||||| ||||||||| || ||||||    
T  43717177 gagcttatgaaaataagctgaaaacaacctatgaaaatgtcctaagctgttttca 43717123  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 1899923 - 1899992
Alignment:
Q  235 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 304  Q
    |||| |||| |||||||||| ||  |||||| |||||||| | ||||||| |||| ||||||||||||||    
T  1899923 aattgttttcgtataagctataaaatgttttcataaactattctaaagagtttataaaaataagctaaaa 1899992  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 7103560 - 7103491
Alignment:
Q  246 tataagctacaagctgttttt-ataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 314  Q
    ||||||||| ||||||||||| |||| |||  ||| |||| || |||||||||||||||| |||||||||    
T  7103560 tataagctataagctgtttttcataagctatcttagagagtttgtgaaaataagctaaaaacaacttatg 7103491  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 12313261 - 12313180
Alignment:
Q  235 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 316  Q
    |||||||||||| ||||||||||  |||||  |||| |||  ||  |||||||||||||||||| | ||| |||||||||||    
T  12313261 aattatttttgtttaagctacaaattgtttacataagctatcttggagagcttatgaaaataaggtgaaatcaacttatgaa 12313180  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 17258950 - 17258870
Alignment:
Q  256 aagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 336  Q
    |||||||||| ||||||||   | ||||||||||||||||||||| ||| || |||||||| ||||| ||| |||||||||    
T  17258950 aagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttca 17258870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 41981948 - 41981872
Alignment:
Q  240 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 316  Q
    ||||||||||| ||| |||||||||| |||||||| |||  ||| |||| ||||||||||||||| || ||||||||    
T  41981948 tttttgtataaactataagctgttttcataaactatttttgagaacttacgaaaataagctaaaagcagcttatgaa 41981872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 336
Target Start/End: Original strand, 2568645 - 2568741
Alignment:
Q  240 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 336  Q
    |||| |||||||||| ||| |||||| |||| |||   |  |||||| |||||||||||||||||  |||||||||| ||||| ||| || ||||||    
T  2568645 ttttcgtataagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataagctgttttca 2568741  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 6593290 - 6593346
Alignment:
Q  244 tgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 300  Q
    |||||| |||| |||||||||| |||| |||  ||| ||||||||||||||||||||    
T  6593290 tgtataggctataagctgttttgataagctaccttagagagcttatgaaaataagct 6593346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 41225088 - 41225132
Alignment:
Q  289 tgaaaataagctaaaaccaacttatgaagatgtcctaaactattt 333  Q
    ||||||||||||||||||| |||||||| |||||  |||||||||    
T  41225088 tgaaaataagctaaaaccagcttatgaacatgtcacaaactattt 41225132  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 3155585 - 3155650
Alignment:
Q  235 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 300  Q
    |||| |||||||| ||||||||||||||||| ||||||||  || |||| || |||||||||||||    
T  3155585 aattgtttttgtacaagctacaagctgttttcataaactatcttgaagaactaatgaaaataagct 3155650  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 25332756 - 25332838
Alignment:
Q  235 aattatttttgtataagctacaagctgtttttataaactagtttaa-agagcttatgaaaataagctaaaaccaacttatgaa 316  Q
    |||| ||||||||||||||  ||||| ||||||||| |||  |||  ||| |||||||||||||||| ||| |||||||||||    
T  25332756 aattgtttttgtataagctctaagctatttttataagctatcttatcagaacttatgaaaataagctgaaaacaacttatgaa 25332838  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 53294202 - 53294137
Alignment:
Q  235 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 300  Q
    |||| |||||||||| |||| ||| |||||||||||||||  ||| ||| |||||||||| |||||    
T  53294202 aattgtttttgtatatgctataagttgtttttataaactatattagagaacttatgaaaacaagct 53294137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 20105497 - 20105453
Alignment:
Q  256 aagctgtttttataaactagtttaaagagcttatgaaaataagct 300  Q
    ||||||||||||||||||| | | ||||||||||| |||||||||    
T  20105497 aagctgtttttataaactattctgaagagcttatgtaaataagct 20105453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 33534246 - 33534178
Alignment:
Q  246 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 314  Q
    ||||| ||||||| ||||||  |||| || |||  |||||||||||||||||||| ||| |||||||||    
T  33534246 tataatctacaagttgttttcgtaaattatttttgagagcttatgaaaataagctgaaaacaacttatg 33534178  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 55084523 - 55084483
Alignment:
Q  281 agagcttatgaaaataagctaaaaccaacttatgaagatgt 321  Q
    |||||||||||||||||||| |||||| |||||||| ||||    
T  55084523 agagcttatgaaaataagctgaaaccagcttatgaacatgt 55084483  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 336
Target Start/End: Original strand, 752956 - 753052
Alignment:
Q  240 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 336  Q
    ||||||||||||||| |||||||||| ||||||||  ||   |||| ||||||||| |||||||| || |||||  | ||||| |||||| ||||||    
T  752956 tttttgtataagctataagctgttttgataaactatcttggggagcatatgaaaattagctaaaaacagcttattgatatgtcataaactgttttca 753052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 39907778 - 39907850
Alignment:
Q  228 aaggtttaattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 300  Q
    |||||| |||| ||||||||||||||| || ||||||| ||||||||  ||| ||| || |||||||||||||    
T  39907778 aaggttaaattgtttttgtataagctataaactgttttcataaactatcttagagaactaatgaaaataagct 39907850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 30428270 - 30428223
Alignment:
Q  12 ttgataaagttaaaattcttatttggtggtggttgaaggttaagaaaa 59  Q
    ||||||| ||||| |||||| ||||||||||||||| |||||||||||    
T  30428270 ttgataatgttaacattcttgtttggtggtggttgatggttaagaaaa 30428223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 12110342 - 12110411
Alignment:
Q  235 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 304  Q
    |||| |||| |||||||||| |||||||||| |||| |||  || |||| ||||||||||||| ||||||    
T  12110342 aattgttttggtataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaa 12110411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 43694658 - 43694589
Alignment:
Q  235 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 304  Q
    |||| |||||||||| |||| ||||||||||||||| |||  |  |||| ||||||||||||||| ||||    
T  43694658 aattgtttttgtatatgctataagctgtttttataagctatatcgaagaacttatgaaaataagcaaaaa 43694589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 15075170 - 15075094
Alignment:
Q  238 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 314  Q
    ||||||| |||||| || ||| | |||| ||||||||  ||| |||||||||| ||||||||||||| || ||||||    
T  15075170 tatttttatataagttataagttattttcataaactaccttagagagcttatggaaataagctaaaaacagcttatg 15075094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 33708484 - 33708432
Alignment:
Q  282 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactatttt 334  Q
    |||||||| || ||||||||||| ||||||||||| || || |||||||||||    
T  33708484 gagcttataaagataagctaaaagcaacttatgaaaatatcataaactatttt 33708432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 34897645 - 34897681
Alignment:
Q  12 ttgataaagttaaaattcttatttggtggtggttgaa 48  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  34897645 ttgatcaagttaaaattcatatttggtggtggttgaa 34897681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 24785290 - 24785334
Alignment:
Q  282 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaa 326  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||    
T  24785290 gagcttatgaaaataaactaaaaacaacttatgaaaatgtcctaa 24785334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 30443881 - 30443940
Alignment:
Q  241 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 300  Q
    ||||||||| |||| |||||||||||||||||||  ||  ||| ||||||||||||||||    
T  30443881 ttttgtatatgctataagctgtttttataaactatattggagaacttatgaaaataagct 30443940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 336
Target Start/End: Complemental strand, 40122827 - 40122740
Alignment:
Q  249 aagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 336  Q
    |||||| ||| ||||||||||| |||   |||| || | ||| ||||||||||||| ||||||||  ||||||| |||||||||||||    
T  40122827 aagctataagttgtttttataagctatcctaaaaagttaatggaaataagctaaaaacaacttatagagatgtcataaactattttca 40122740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 24785233 - 24785283
Alignment:
Q  281 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactat 331  Q
    |||||||||| ||||||||||||| ||||||||||| ||||| ||| ||||    
T  24785233 agagcttatgtaaataagctaaaaacaacttatgaacatgtcataagctat 24785283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 317
Target Start/End: Complemental strand, 28622082 - 28622005
Alignment:
Q  240 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaag 317  Q
    ||||||| ||||||| |||||||||| ||||||||  ||  ||| ||||||||||||| || ||| || |||||||||    
T  28622082 tttttgtgtaagctataagctgttttcataaactatcttcgagaacttatgaaaataacctgaaaacagcttatgaag 28622005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 6945 - 7004
Alignment:
Q  246 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaac 305  Q
    ||||||||| ||||||||||| ||| |||   | ||||||||||||||||||||||||||    
T  6945 tataagctataagctgtttttgtaagctatcatgaagagcttatgaaaataagctaaaac 7004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 9109333 - 9109258
Alignment:
Q  241 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 316  Q
    |||||||||||||| |||||||||| || ||||| |||  ||| | |||||||||||| | ||| |||||||||||    
T  9109333 ttttgtataagctataagctgttttcattaactaatttggagaacctatgaaaataaggtgaaaacaacttatgaa 9109258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 316
Target Start/End: Original strand, 33737774 - 33737805
Alignment:
Q  285 cttatgaaaataagctaaaaccaacttatgaa 316  Q
    ||||||||||||||||||||||||||||||||    
T  33737774 cttatgaaaataagctaaaaccaacttatgaa 33737805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 28641791 - 28641751
Alignment:
Q  281 agagcttatgaaaataagctaaaaccaacttatgaagatgt 321  Q
    |||||||||||||||||||||||| || |||||||| ||||    
T  28641791 agagcttatgaaaataagctaaaaacagcttatgaacatgt 28641751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 35070559 - 35070475
Alignment:
Q  231 gtttaattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatga 315  Q
    |||||||| |||||||| ||| || ||||||||||| ||| |||  ||  |||||||||||||||||| | ||| || |||||||    
T  35070559 gtttaattgtttttgtacaagttataagctgtttttgtaagctatgtttgagagcttatgaaaataagttgaaaacagcttatga 35070475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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