View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_12 (Length: 457)
Name: NF7719_low_12
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 28036625 - 28036176
Alignment:
| Q |
1 |
tgatgctgcaggttcagtggtttcattggcacgtgacaatgatcgttacggaaaactaattatagaagaaggtggtgttcaacctcttctgaaacttctt |
100 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
28036625 |
tgatgctgcagcttcattggtttcattggcacgtgacaatgatcgttacggaaaactaattatagaagaaggtggtgttccacctcttcttaaacttctt |
28036526 |
T |
|
| Q |
101 |
aaagaaggaagacttgatggacaagaaaacgctgcaagagcaattggattgcttggtagagatccagaaagcgttgaacatattgtgaattgtggtgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28036525 |
aaagaaggaagacttgatggacaagaaaacgctgcaagagcaattggattacttggtagagatccagaaagtgttgaacatattgtgaattgtggtgttt |
28036426 |
T |
|
| Q |
201 |
gttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatccaaaatgtca |
300 |
Q |
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| T |
28036425 |
gttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatccaaaatgtca |
28036326 |
T |
|
| Q |
301 |
agatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagtattctattacaaacaaacaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28036325 |
agatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagtattctattaccaacaaacaa |
28036226 |
T |
|
| Q |
401 |
aacatgtcctccttacattctctagttatggctagcaacaccaacaccaa |
450 |
Q |
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| T |
28036225 |
aacatgtcctccttacattctcttgttatggctagcaacaccaacaccaa |
28036176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 115 - 388
Target Start/End: Original strand, 8756637 - 8756910
Alignment:
| Q |
115 |
tgatggacaagaaaacgctgcaagagcaattggattgcttggtagagatccagaaagcgttgaacatattgtgaattgtggtgtttgttcggtttttgcg |
214 |
Q |
| |
|
|||||||||||| || ||||| ||||| ||||| |||||||| | || | || || ||||||||||| | || |||||||||||| ||||||||| |
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| T |
8756637 |
tgatggacaagagaatgctgctagagctattggtctgcttggtcgtgacgcggagagtgttgaacatatgattcatgttggtgtttgttctgtttttgcg |
8756736 |
T |
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| Q |
215 |
aaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatccaaaatgtcaagatcattttgctc |
314 |
Q |
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||| | || ||||| |||| ||||| |||||| ||||||||||||||| |||| |||||||| || || |||| |||||||| || | |||||||| |
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| T |
8756737 |
aaaattcttaaagaaggtcctatgaaagttcaaggtgttgttgcttgggctgtttctgaacttgctgctaattatcctaaatgtcaggaactttttgctc |
8756836 |
T |
|
| Q |
315 |
agaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagtattctatt |
388 |
Q |
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|| ||||| |||| | ||||||||| ||||| | ||||||||||| || | ||||||||||||||| ||||| |
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| T |
8756837 |
agcataatattattaggttgcttgttggtcatttagcttttgaaactgttgaggaacatagtaagtatgctatt |
8756910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 378
Target Start/End: Complemental strand, 32031687 - 32031502
Alignment:
| Q |
193 |
tggtgtttgttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatcca |
292 |
Q |
| |
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|||||||||||| ||||| ||||| | || ||||| |||| ||||| |||||| ||||| ||||||||| |||| ||||||| | | |||| |
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| T |
32031687 |
tggtgtttgttctgttttcgcgaagattcttaaagaaggtcctatgaaagttcaagctgttgtagcttgggctgtttctgaacttgtttctaagtatcct |
32031588 |
T |
|
| Q |
293 |
aaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaa |
378 |
Q |
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|||||||||||| |||||||||| ||||| | || | |||||||| ||||| ||||||||||||| |||||||||||||||| |
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| T |
32031587 |
aaatgtcaagatgtttttgctcagcataatattgttaggttgcttgtgagtcacattgcttttgaaactgttcaagaacatagtaa |
32031502 |
T |
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