View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7719_low_13 (Length: 455)
Name: NF7719_low_13
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 9673535 - 9673960
Alignment:
| Q |
19 |
gcttccgcctcgaaaactttcccagtgttggaatatacattaatcaaggctgaaaatgtccaactgtcaggtgtgcaggtccgcgaattttttatgtctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9673535 |
gcttccgcctcgaaaactttcccagtgttggaatatacattaatcaaggctgaaaatgtccaactgtcaggtgtgcaggtccgcgaattttttatgtctt |
9673634 |
T |
|
| Q |
119 |
gaaaaatctcaagagcttcatcattgcatccaacgtcagcacacatagctaaaagcacattatagagatctatactcacattcattcctttccccttcat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9673635 |
gaaaaatctcaagagcttcatcattgcatccaacgtcagcacacatagctaaaagcacattatagagatctatactcacattcattcctttccccttcat |
9673734 |
T |
|
| Q |
219 |
ttccttataaacactaatagcatcttgaccaaattgcgctctagtatagattctcaaaagagttgaatacgttgtaaaatccggtgaaactccattactt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9673735 |
ttccttataaacactaatagcatcttgaccaaattgcgctctagtatagattctcaaaagagttgaatacgttgtaaaatccggtgaaactccattactt |
9673834 |
T |
|
| Q |
319 |
ttcatctcttgatatatagttttagcttgccaatgcctcttgcctctcaacatagcaaccaacaaaacattatacatttccacgttagccttcacaccaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9673835 |
ttcatctcttgatatatagttttagcttgccaatgcctcttgcctctcaacatagcaaccaacaaaacattatacatttccacgttagccttcacaccaa |
9673934 |
T |
|
| Q |
419 |
gacccttcatttctaagtgcatattc |
444 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
9673935 |
gacccttcatttctaagtgcatattc |
9673960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University