View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7719_low_14 (Length: 453)

Name: NF7719_low_14
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7719_low_14
NF7719_low_14
[»] chr1 (22 HSPs)
chr1 (156-437)||(29434568-29434849)
chr1 (1-145)||(29434944-29435088)
chr1 (49-141)||(41804039-41804131)
chr1 (43-141)||(46973179-46973276)
chr1 (1-64)||(29763176-29763240)
chr1 (42-141)||(18975119-18975218)
chr1 (74-141)||(36908553-36908620)
chr1 (42-141)||(46141757-46141856)
chr1 (37-141)||(26633505-26633606)
chr1 (1-62)||(42572714-42572776)
chr1 (49-145)||(49927519-49927615)
chr1 (42-141)||(6437538-6437637)
chr1 (49-144)||(11183158-11183253)
chr1 (74-145)||(19054030-19054101)
chr1 (1-55)||(27487623-27487678)
chr1 (1-35)||(26637213-26637247)
chr1 (1-35)||(44596917-44596951)
chr1 (1-35)||(49927458-49927492)
chr1 (41-115)||(52802131-52802205)
chr1 (1-109)||(6434755-6434864)
chr1 (1-85)||(13972093-13972178)
chr1 (6-62)||(49395657-49395714)
[»] chr3 (23 HSPs)
chr3 (1-144)||(41802970-41803114)
chr3 (1-145)||(13896833-13896978)
chr3 (1-145)||(55207620-55207765)
chr3 (1-115)||(52570523-52570638)
chr3 (1-85)||(43476223-43476308)
chr3 (1-145)||(51402355-51402500)
chr3 (42-145)||(19440227-19440330)
chr3 (1-85)||(55385168-55385253)
chr3 (49-145)||(7247866-7247962)
chr3 (1-115)||(34694391-34694506)
chr3 (3-84)||(24703374-24703456)
chr3 (2-114)||(46347679-46347791)
chr3 (1-141)||(49219748-49219889)
chr3 (42-145)||(2432942-2433045)
chr3 (42-141)||(41579723-41579822)
chr3 (59-142)||(42756133-42756216)
chr3 (1-35)||(41137790-41137824)
chr3 (1-62)||(51696531-51696593)
chr3 (42-91)||(1294076-1294125)
chr3 (50-115)||(41805682-41805747)
chr3 (50-115)||(46344938-46345003)
chr3 (43-115)||(13747719-13747790)
chr3 (1-33)||(19454308-19454340)
[»] chr7 (15 HSPs)
chr7 (1-145)||(30355196-30355341)
chr7 (1-145)||(28980129-28980275)
chr7 (37-141)||(46860486-46860590)
chr7 (1-141)||(46863301-46863442)
chr7 (5-115)||(36394899-36395010)
chr7 (1-114)||(41047779-41047893)
chr7 (1-89)||(40587688-40587777)
chr7 (50-114)||(41049196-41049260)
chr7 (74-141)||(21185594-21185661)
chr7 (1-55)||(21188383-21188438)
chr7 (43-141)||(47060902-47060999)
chr7 (1-85)||(42682025-42682110)
chr7 (1-61)||(43686864-43686925)
chr7 (43-115)||(37340303-37340375)
chr7 (43-115)||(42499410-42499482)
[»] chr2 (16 HSPs)
chr2 (1-145)||(41500191-41500336)
chr2 (1-145)||(43491080-43491225)
chr2 (43-145)||(25184830-25184931)
chr2 (1-141)||(24512142-24512283)
chr2 (1-94)||(10365749-10365843)
chr2 (43-145)||(35490651-35490753)
chr2 (1-65)||(2920473-2920538)
chr2 (43-139)||(43943666-43943762)
chr2 (43-145)||(34921759-34921860)
chr2 (49-141)||(2917658-2917750)
chr2 (37-145)||(35493335-35493443)
chr2 (1-145)||(2648088-2648233)
chr2 (42-91)||(26543988-26544037)
chr2 (43-112)||(41183224-41183292)
chr2 (8-87)||(29093792-29093872)
chr2 (49-141)||(45475415-45475507)
[»] chr8 (11 HSPs)
chr8 (1-145)||(41858080-41858223)
chr8 (1-141)||(18441398-18441539)
chr8 (49-142)||(41855342-41855435)
chr8 (42-141)||(18438609-18438708)
chr8 (1-81)||(26451515-26451596)
chr8 (1-115)||(42602461-42602576)
chr8 (43-145)||(18205757-18205859)
chr8 (43-145)||(40077250-40077352)
chr8 (59-145)||(39751045-39751130)
chr8 (52-141)||(7168063-7168152)
chr8 (42-115)||(42605233-42605306)
[»] chr6 (7 HSPs)
chr6 (1-141)||(12783914-12784055)
chr6 (1-145)||(13401457-13401602)
chr6 (42-141)||(13404631-13404730)
chr6 (1-35)||(26855977-26856011)
chr6 (43-115)||(29076323-29076395)
chr6 (43-115)||(29109856-29109928)
chr6 (43-115)||(29111296-29111368)
[»] chr4 (24 HSPs)
chr4 (10-141)||(29700268-29700400)
chr4 (1-85)||(56138283-56138368)
chr4 (1-115)||(958551-958665)
chr4 (42-145)||(37959719-37959822)
chr4 (1-91)||(44561287-44561378)
chr4 (6-85)||(4786296-4786376)
chr4 (42-145)||(11494515-11494617)
chr4 (1-55)||(34530752-34530807)
chr4 (49-115)||(6280858-6280924)
chr4 (37-141)||(955767-955871)
chr4 (49-145)||(8109362-8109458)
chr4 (42-114)||(33383807-33383879)
chr4 (43-139)||(41023363-41023459)
chr4 (53-141)||(49572910-49572998)
chr4 (1-55)||(39588127-39588182)
chr4 (1-47)||(56304919-56304966)
chr4 (2-115)||(1041936-1042050)
chr4 (43-141)||(9889969-9890067)
chr4 (1-35)||(11287557-11287591)
chr4 (43-141)||(21470878-21470976)
chr4 (37-115)||(51426538-51426616)
chr4 (77-141)||(18578624-18578688)
chr4 (49-93)||(21538495-21538539)
chr4 (1-81)||(42885484-42885567)
[»] chr5 (16 HSPs)
chr5 (1-144)||(18307226-18307370)
chr5 (74-141)||(18310052-18310119)
chr5 (6-141)||(20192328-20192464)
chr5 (42-141)||(3603147-3603246)
chr5 (49-141)||(34682232-34682324)
chr5 (1-115)||(542747-542862)
chr5 (43-141)||(18538335-18538433)
chr5 (1-85)||(25497542-25497627)
chr5 (49-141)||(8702204-8702296)
chr5 (37-141)||(25499881-25499985)
chr5 (49-145)||(41201699-41201795)
chr5 (1-141)||(3600311-3600453)
chr5 (1-85)||(11346038-11346124)
chr5 (43-141)||(34123935-34124033)
chr5 (1-35)||(42865761-42865795)
chr5 (42-115)||(20200147-20200220)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-85)||(12344-12430)
[»] scaffold0794 (1 HSPs)
scaffold0794 (43-112)||(5276-5344)
[»] scaffold0618 (1 HSPs)
scaffold0618 (50-115)||(3886-3951)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 156 - 437
Target Start/End: Complemental strand, 29434849 - 29434568
Alignment:
Q  156 aaaagaaacaacaaacagcgggcatcaaattttaacaagcactaagctcacaggcagcttataagctaattttaacgagctgtaagctaggaaaaggaat 255  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  29434849 aaaagaaacaacaaacagcggccatcaaattttaacaagcactaagctcacaggcagcttataagctaattttaacaagctgtaagctaggaaatggaat 29434750  T
Q  256 tttgggcaatttagtacggagctgctactgtatccgtatgaacttgtcatcaatcacgacactctcactgtgttgatcgcagcatatttcatttcaaatt 355  Q
    ||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29434749 tttgggcaatttagtgcggagctgctacagtatccgtatcaacttgtcatcaatcacgacactctcactgtgttgatcgcagcatatttcatttcaaatt 29434650  T
Q  356 ccaaccctagaacacagtctgagaaatgtattcttgtattcctcacaacgtttctctccattttcacttctcaacaacaact 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29434649 ccaaccctagaacacagtctgagaaatgtattcttgtattcctcacaacgtttctctccattttcacttctcaacaacaact 29434568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 29435088 - 29434944
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattc 100  Q
    |||||||||||||| |||||||||||||||||||||||||| || || ||||||||| ||||||||| || ||||||||||||||||||||||| |||||    
T  29435088 taatggatgagagaacttctgccaaatttgtagcaaaaatcctctgcagttaactaccgaggttgtcatcggaagttaactgcagtcggttattgaattc 29434989  T
Q  101 ttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    ||||| |||||||||  |||  || |||| ||||||||| |||||    
T  29434988 ttcgaaagttaactgccaagagggtaaaaacgtattttattcgtg 29434944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 41804039 - 41804131
Alignment:
Q  49 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    ||||||||| |||||| ||||| | |||||||||||||||||| || ||||| ||| ||||||||||   | | |||||||||||||||||||    
T  41804039 gttaactaccgaggttttcctcggcagttaactgcagtcggtttttgaattcctcggcagttaactgccgaaggggcaaaagcgtattttact 41804131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 46973276 - 46973179
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    ||||| |||||||| ||||||| ||||| | |||||||||||| ||||| || ||||| ||| ||||||||||  |||| ||||||| |||||||||||    
T  46973276 tcggcagttaacta-tgaggttttcctcggcagttaactgcagccggtttttgaattcctcggcagttaactgccaagggggcaaaatcgtattttact 46973179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29763176 - 29763240
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggtt 64  Q
    |||||||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| ||||||    
T  29763176 taatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgaggtt 29763240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 18975119 - 18975218
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||| ||||||||| || ||| ||||| | |||||||||||  | |||||||||||| |||||||||||| |   ||| ||||||| |||||||||||    
T  18975119 ttcggcagttaactaccgaagttttcctctgcagttaactgcaaccagttattaaattcctcgacagttaaccgccgagggggcaaaaacgtattttact 18975218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 36908620 - 36908553
Alignment:
Q  74 agttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||||||||| ||||| || ||||||||||||||||||||   |||||||||||  ||||||||||    
T  36908620 agttaactgcagccggtttttgaattcttcgacagttaactgccgaggaggcaaaaatgtattttact 36908553  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 46141856 - 46141757
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||| ||||||||| || ||| ||||| | |||||||||||| |||||||| ||||| ||| ||||||||||   ||  ||||||| |||||||||||    
T  46141856 ttcggcagttaactaccgatgttttcctcggcagttaactgcagccggttattgaattcctcggcagttaactgccgagagggcaaaatcgtattttact 46141757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 26633606 - 26633505
Alignment:
Q  37 aaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatt 136  Q
    |||| |||||| ||||||||| |||||| ||||| | |||||||||||  ||||| || |||||||||  ||||||| |   ||| ||||||||||||||    
T  26633606 aaattttcggcagttaactaccgaggttttcctcggcagttaactgcaaccggtttttgaattcttcggtagttaaccg---agggggcaaaagcgtatt 26633510  T
Q  137 ttact 141  Q
    |||||    
T  26633509 ttact 26633505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 42572714 - 42572776
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgagg 62  Q
    |||||||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| ||||    
T  42572714 taatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgagg 42572776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 49927519 - 49927615
Alignment:
Q  49 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    ||||||||| |||||| | ||| | ||||||||  || ||||| |||||||||||| ||||||||||   ||| | ||||| |||||||||||||||    
T  49927519 gttaactaccgaggtttttctcggcagttaactatagccggtttttaaattcttcggcagttaactgccgaggggacaaaaacgtattttactcgtg 49927615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 6437538 - 6437637
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||| | ||||||| |||||| ||||  | ||||||||||||||| ||||| | ||| ||| ||||||||||   ||  |||||||||||||||||||    
T  6437538 ttcggcagataactaccgaggttttccttggtagttaactgcagtcgattattgacttcctcggcagttaactgccgagagggcaaaagcgtattttact 6437637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 11183253 - 11183158
Alignment:
Q  49 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgt 144  Q
    ||||||||| |||||| ||||| | |||||||||||| ||| | || ||||| ||  ||||||||||  ||||  |||||| ||||||||||||||    
T  11183253 gttaactaccgaggttttcctcggcagttaactgcagccggatttttaattcctcagcagttaactgtcaagggagcaaaaacgtattttactcgt 11183158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 19054101 - 19054030
Alignment:
Q  74 agttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    |||||||||||| ||||| || ||||| ||| ||||||||||   ||| ||||||| |||||||||||||||    
T  19054101 agttaactgcagccggtttttgaattcctcggcagttaactgtcgagggggcaaaaacgtattttactcgtg 19054030  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27487623 - 27487678
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaact 55  Q
    |||||||||||||||||||||||| |||||||||| || ||| ||||| |||||||    
T  27487623 taatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 27487678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26637213 - 26637247
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  26637213 taatggatgagagagcttctgccagatttgtagca 26637247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44596951 - 44596917
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  44596951 taatggatgagagagtttctgccaaatttgtagca 44596917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49927458 - 49927492
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  49927458 taatggatgagagagcttctgccagatttgtagca 49927492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 52802205 - 52802131
Alignment:
Q  41 cttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    ||||||| ||||||||| |||||| ||||| | |||||||||||| ||| | | |||||| ||| ||||||||||    
T  52802205 cttcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactg 52802131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 6434864 - 6434755
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    ||||||||||||| |||||| ||| |||||||||| || ||| | ||| ||||||||| || ||| |||| || || ||||||||| || || || ||||    
T  6434864 taatggatgagagtgcttctaccagatttgtagcagaagatccttggcagttaactaccgaagttttccttagcagataactgcagccgattttttaatt 6434765  T
Q  100 cttcgacagt 109  Q
    | ||||||||    
T  6434764 catcgacagt 6434755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 13972178 - 13972093
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcag 85  Q
    |||| ||||||||||||||||||| |||||||||| || ||| ||||| ||| | ||| |||||| ||||| |  |||||||||||    
T  13972178 taatagatgagagagcttctgccagatttgtagcagaagatcctcggctgtttaataccgaggttttcctcggctgttaactgcag 13972093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 49395714 - 49395657
Alignment:
Q  6 gatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgagg 62  Q
    ||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| ||||    
T  49395714 gatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgagg 49395657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 41803114 - 41802970
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||| |||||| ||||| | |||||||||||| ||||| |||||||    
T  41803114 taatggatgagagagcttctgccagatttgtagcaaaagatcctcggcagttaactaccgaggttttcctcggcagttaactgcagccggtttttaaatt 41803015  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttactcgt 144  Q
    ||||| ||||||||||   ||  ||||||| ||||||||||||||    
T  41803014 cttcggcagttaactgccgagtgggcaaaaacgtattttactcgt 41802970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 13896833 - 13896978
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||| ||||||||| |||||| |||||   |||||||||||| | |||||||||||    
T  13896833 taatggatgagagagcttctgccagatttgtagtagaaaatcttcggcagttaactaccgaggttttcctcgacagttaactgcagccagttattaaatt 13896932  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    ||||  || |||||||   ||||| ||||| | |||||||||||||    
T  13896933 cttcagcaattaactgccgaggagtcaaaaacatattttactcgtg 13896978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 55207620 - 55207765
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||||||||||||||| |||||||||| || ||| ||||| |||||||||  ||||||||||  | |||||||||||  ||||| || ||||    
T  55207620 taatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccaaggttgtcctaggcagttaactgcaaccggtttttgaatt 55207719  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    ||||| ||||||||||   | | |||||||| ||||||||||||||    
T  55207720 cttcggcagttaactgccgatggggcaaaagagtattttactcgtg 55207765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 52570523 - 52570638
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    ||||| ||||||||| |||||||| |||||||| | || ||| ||||| ||||||||| |||||| | ||| | |||||||||||||||||| || ||||    
T  52570523 taatgaatgagagagtttctgccagatttgtagtagaagatcctcggcagttaactaccgaggtttttctcggtagttaactgcagtcggtttttgaatt 52570622  T
Q  100 cttcgacagttaactg 115  Q
    ||||| ||||||||||    
T  52570623 cttcggcagttaactg 52570638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 43476308 - 43476223
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcag 85  Q
    ||||||||||||||||||||| || ||||||||||||| ||| ||||| ||||||||| |||||| ||||| | ||||||||||||    
T  43476308 taatggatgagagagcttctgtcagatttgtagcaaaagatcctcggcagttaactaccgaggttttcctcggcagttaactgcag 43476223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 51402355 - 51402500
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    ||||||||||||||||||||| || |||||||||| || ||| ||||| ||||||||| |||||| |||||   |||||||| || ||| || || ||||    
T  51402355 taatggatgagagagcttctgacagatttgtagcagaagatcctcggcagttaactaccgaggttttcctcgacagttaactacaatcgatttttgaatt 51402454  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
     |||  || ||||||| | |||| |||||| |||||||||||||||    
T  51402455 attctgcaattaactgctgaggaagcaaaaacgtattttactcgtg 51402500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 19440330 - 19440227
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||| ||||||||| |||||| ||||| | |||||||||||| |||||  | ||||||||| ||||||||||   ||||||||||||  |||||||||    
T  19440330 ttcggcagttaactaccgaggttttcctcggcagttaactgcagccggtttatgaattcttcggcagttaactgccgaggaggcaaaagtttattttact 19440231  T
Q  142 cgtg 145  Q
    ||||    
T  19440230 cgtg 19440227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 55385253 - 55385168
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcag 85  Q
    |||||||||||||||||||||||| |||||||||| || ||| ||| | ||||||||| |||||| ||||| | ||||||||||||    
T  55385253 taatggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaactaccgaggttttcctcggcagttaactgcag 55385168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 7247866 - 7247962
Alignment:
Q  49 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    ||||||||| |||||| |||||   |||||||||||| |||||||| ||||| ||| ||||||||||   ||| ||||||||||||||||| |||||    
T  7247866 gttaactaccgaggttttcctcgtcagttaactgcagccggttattgaattcctcggcagttaactgccgagggggcaaaagcgtattttattcgtg 7247962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 34694391 - 34694506
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||||||||||||||| |||||||||| || ||| ||||| ||||||| | |||||| | ||| | |||| ||||||| ||| | |  ||||    
T  34694391 taatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactcccgaggtttttctcggcagtttactgcagccggatttctaatt 34694490  T
Q  100 cttcgacagttaactg 115  Q
    | ||||||||||||||    
T  34694491 cctcgacagttaactg 34694506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 24703374 - 24703456
Alignment:
Q  3 atggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgca 84  Q
    |||||||||||||||||||||| |||||||||| || ||| ||||| ||||||| |||||| | ||||| | |||||||||||    
T  24703374 atggatgagagagcttctgccagatttgtagcagaagatcatcggcagttaactcctgaggatttcctcggcagttaactgca 24703456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 46347679 - 46347791
Alignment:
Q  2 aatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattc 100  Q
    |||||||||||||| |||| ||  |||||||||| || ||||||| | ||||| ||  |||||| ||||| | |||||||||||| || ||||| ||||     
T  46347679 aatggatgagagagtttctccctgatttgtagcagaagatcttcgacagttaattatcgaggttttcctcggcagttaactgcagccgattattgaatt- 46347777  T
Q  101 ttcgacagttaact 114  Q
    ||||||||||||||    
T  46347778 ttcgacagttaact 46347791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 49219748 - 49219889
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    ||||||||| ||||||||||| ||||||||||||| || ||| |||   |||||||||  ||||| ||||| | |||||||||||| ||| | |  ||||    
T  49219748 taatggatgggagagcttctgtcaaatttgtagcagaagatcctcgatagttaactaccaaggttttcctcggcagttaactgcagccggatttctaatt 49219847  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    | ||| |||||||||    |||||||||||  ||||||||||    
T  49219848 cctcggcagttaactaccgaggaggcaaaattgtattttact 49219889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 2432942 - 2433045
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||| |||||||||  ||||| |||||   ||||||||| |  |||||||| ||||| ||||||||||||||   ||| |  ||||||||||||||||    
T  2432942 ttcggcagttaactaccaaggttttcctcgacagttaactgtatccggttattgaattcctcgacagttaactgccgaggggataaaagcgtattttact 2433041  T
Q  142 cgtg 145  Q
    ||||    
T  2433042 cgtg 2433045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 41579723 - 41579822
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||| ||||||||| |||||| ||||| | |||||||||||| |||||||| ||||| ||  || |||||||   ||| || |||| |||||||||||    
T  41579723 ttcggcagttaactaccgaggttttcctcggcagttaactgcagccggttattgaattcctcagcaattaactgccgagggggaaaaatcgtattttact 41579822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 42756216 - 42756133
Alignment:
Q  59 gaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 142  Q
    |||||| ||||| | |||||||||||  ||| | || ||||| |||||||||||||| | ||| ||||||| ||||||||||||    
T  42756216 gaggttttcctcggcagttaactgcaaccggatttttaattcctcgacagttaactgctgagggggcaaaaacgtattttactc 42756133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41137824 - 41137790
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  41137824 taatggatgagagagcttctgccagatttgtagca 41137790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 51696531 - 51696593
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgagg 62  Q
    |||||||||||||||||||||||| ||||| |||| || ||| ||||| ||||||||| ||||    
T  51696531 taatggatgagagagcttctgccagatttgcagcagaagatcctcggcagttaactaccgagg 51696593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 1294076 - 1294125
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggtt 91  Q
    |||||| ||||||| | |||||| ||||| ||||||||||||||||||||    
T  1294076 ttcggcagttaactgccgaggttttcctcggaagttaactgcagtcggtt 1294125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 41805682 - 41805747
Alignment:
Q  50 ttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    |||||| | |||||| ||||| | |||||| ||||| ||||  |||||||||||||||||||||||    
T  41805682 ttaactcccgaggttttcctcggcagttaattgcagccggtctttaaattcttcgacagttaactg 41805747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 46345003 - 46344938
Alignment:
Q  50 ttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    |||||||| |||||| ||||| | |||||||||||| || || || ||||| ||||||||||||||    
T  46345003 ttaactaccgaggttttcctcggcagttaactgcagccgatttttgaattcctcgacagttaactg 46344938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 13747719 - 13747790
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    ||||| ||||||||| |||||| ||||||| |||||||||||| ||| | | |||||| ||| ||||||||||    
T  13747719 tcggcagttaactac-gaggttttcctcagcagttaactgcagccggatttcaaattcatcggcagttaactg 13747790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 19454308 - 19454340
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtag 33  Q
    |||||||||||||||||||||||| ||||||||    
T  19454308 taatggatgagagagcttctgccagatttgtag 19454340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 30355196 - 30355341
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| |||||| ||||| | |||||||||||| || || || ||||    
T  30355196 taatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactgcagccgatttttgaatt 30355295  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    ||||  || |||||||   ||| |||||||||||||||||||||||    
T  30355296 cttcagcaattaactgccgagggggcaaaagcgtattttactcgtg 30355341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 28980129 - 28980275
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcct-cagaagttaactgcagtcggttattaaat 98  Q
    ||||||||||||||||||||| || |||||||||| |||||| ||||| ||||||||| |||||| |||| | | |||||||||||  ||| |||| |||    
T  28980129 taatggatgagagagcttctgtcagatttgtagcagaaaatcctcggcagttaactaccgaggttttccttcggcagttaactgcatccggatattgaat 28980228  T
Q  99 tcttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    |||||| ||| |||||| | ||| ||||||| |||||||||||||||    
T  28980229 tcttcggcagctaactgctgagggggcaaaaacgtattttactcgtg 28980275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 46860590 - 46860486
Alignment:
Q  37 aaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatt 136  Q
    |||| |||||| ||||||| | ||||||  |||||  |||||||||||||||||| || ||||| ||||||||||||||   ||| ||||||||||||||    
T  46860590 aaattttcggcagttaactgccgaggtttgcctcaatagttaactgcagtcggtttttcaattcctcgacagttaactgccgagggggcaaaagcgtatt 46860491  T
Q  137 ttact 141  Q
    |||||    
T  46860490 ttact 46860486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 46863301 - 46863442
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||| ||||||||||||| |||||||||| || ||||||||| ||||||||| ||| || || |  | |||||||||||| ||||| || ||||    
T  46863301 taatggatgaaagagcttctgccagatttgtagcagaagatcttcggcagttaactacagagattttcgttcgcagttaactgcagccggtttttcaatt 46863400  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
      ||| ||||||||||   | | ||||||| |||||||||||    
T  46863401 tctcggcagttaactgccgatggggcaaaaacgtattttact 46863442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 36394899 - 36395010
Alignment:
Q  5 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 103  Q
    |||||||||||||||||||| |||||||||| || ||| ||||  ||||||||| |||||| ||||| | | |||| |||||||||||  | ||||||||    
T  36394899 ggatgagagagcttctgccagatttgtagcagaagatcctcggtagttaactaccgaggttttcctcggcacttaattgcagtcggtttgtgaattcttc 36394998  T
Q  104 gacagttaactg 115  Q
    | || |||||||    
T  36394999 ggcaattaactg 36395010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 41047893 - 41047779
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||||||||||  ||| |||||||||| || ||| ||||| ||||||||| || ||| ||||| | |||||||| ||  || ||||||||||    
T  41047893 taatggatgagagagcttcctccagatttgtagcagaagatcctcggcagttaactaccgaagttttcctcggcagttaactacacccgattattaaatt 41047794  T
Q  100 cttcgacagttaact 114  Q
    ||||  |||||||||    
T  41047793 cttctgcagttaact 41047779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 40587777 - 40587688
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcgg 89  Q
    ||||||||||||||||||||  || |||| ||||| || ||| ||||| |||||||||||||||| |||||   ||||||||||||||||    
T  40587777 taatggatgagagagcttctttcagatttatagcataagatcctcggcagttaactactgaggttttcctcgacagttaactgcagtcgg 40587688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 41049196 - 41049260
Alignment:
Q  50 ttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaact 114  Q
    |||||||| |||||| ||||| | |||||||||||| || ||||| |||||||||||||||||||    
T  41049196 ttaactaccgaggttttcctcggcagttaactgcagccgattattgaattcttcgacagttaact 41049260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 21185661 - 21185594
Alignment:
Q  74 agttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||||| ||| |||||||| ||||||||| ||||||||||   ||||||||||| |||||||||||    
T  21185661 agttaactacagccggttattgaattcttcggcagttaactgccgaggaggcaaaatcgtattttact 21185594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21188383 - 21188438
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaact 55  Q
    |||||||||||||||||||||||| |||||||||| || ||| ||||| |||||||    
T  21188383 taatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 21188438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 47060999 - 47060902
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    ||||| ||||||||| |||||| ||||| | |||||||| ||| || || || ||||| ||||||||||||||   ||| ||||||| |||||||||||    
T  47060999 tcggcagttaactaccgaggttttcctcggcagttaactacagccgatt-ttgaattcctcgacagttaactgccgagggggcaaaaacgtattttact 47060902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 42682110 - 42682025
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcag 85  Q
    |||||||||||||| ||| ||| | |||||||||| || ||| ||||| ||||| ||| |||||| ||||| | ||||||||||||    
T  42682110 taatggatgagagaacttatgctagatttgtagcagaagatcctcggcagttaattaccgaggttttcctcggcagttaactgcag 42682025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 43686864 - 43686925
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgag 61  Q
    |||||||||||||||||| || || |||||||||| |||||  ||||| |||||||||||||    
T  43686864 taatggatgagagagcttatgtcagatttgtagcagaaaattctcggcagttaactactgag 43686925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 37340375 - 37340303
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    ||||| ||||||||| |||||| | ||| | |||||||||||  ||||| || ||||| ||||||||||||||    
T  37340375 tcggcagttaactaccgaggtttttctcggcagttaactgcaaccggtttttgaattcctcgacagttaactg 37340303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 42499482 - 42499410
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    ||||| ||||||||| |||||| ||||| | |||||||||||||||| | | |||||| ||| || |||||||    
T  42499482 tcggcagttaactaccgaggttttcctcggcagttaactgcagtcggatttcaaattcctcggcaattaactg 42499410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 41500191 - 41500336
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||||||||| ||||| |||||||||| || ||| ||||| ||||||||| |||||| | ||| | |||||||||||| ||| | || ||||    
T  41500191 taatggatgagagagcttatgccagatttgtagcagaagatcctcggcagttaactaccgaggtttttctcggcagttaactgcagccggattttgaatt 41500290  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    ||| || |||||||||   ||| |||||||||||||||||||||||    
T  41500291 ctttgatagttaactgccgagggggcaaaagcgtattttactcgtg 41500336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 43491225 - 43491080
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||||||||||||||| |||| || || || ||  ||||| |||||||||  ||||| |||||   |||||| ||||| |||||||||||||    
T  43491225 taatggatgagagagcttctgccagatttataacagaagattctcggcagttaactaccaaggttttcctcgacagttaattgcagccggttattaaatt 43491126  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    | ||| |||||||||| |||| || ||||||  |||||||||||||    
T  43491125 cctcggcagttaactgttaagaagacaaaagtatattttactcgtg 43491080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 25184830 - 25184931
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 142  Q
    ||||| ||||||||| |||||| ||||| | |||||||||||| ||||| | |||||| |||||||||||||| | ||| ||||||| ||||||||||||    
T  25184830 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggtt-tcaaattcctcgacagttaactgctgagggggcaaaaacgtattttactc 25184928  T
Q  143 gtg 145  Q
    |||    
T  25184929 gtg 25184931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 24512283 - 24512142
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| |||||| |  || | | ||||||||||  |||| || ||||    
T  24512283 taatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgaggtttttttcggcaattaactgcagctggttttttaatt 24512184  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    | || |||||||||||   ||| || |||| |||||||||||    
T  24512183 cctcaacagttaactgtcgagggggtaaaaacgtattttact 24512142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 10365749 - 10365843
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttatt 94  Q
    |||||||||||||||||| ||||| ||||||||||||| ||| |||||  ||||||||  ||||| ||||| | |||||||| ||| ||||||||    
T  10365749 taatggatgagagagcttatgccagatttgtagcaaaagatcctcggcatttaactaccaaggttttcctcggcagttaactacagccggttatt 10365843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 35490753 - 35490651
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 142  Q
    ||||| |||||||||  ||||| || |||| |||||||||||| ||||| || ||||||||| |||||||| |   |||||||||||  |||||||||||    
T  35490753 tcggcagttaactaccaaggttttcttcagcagttaactgcagccggtttttgaattcttcggcagttaaccgtcgaggaggcaaaaatgtattttactc 35490654  T
Q  143 gtg 145  Q
    |||    
T  35490653 gtg 35490651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2920473 - 2920538
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttg 65  Q
    |||||||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| |||||||    
T  2920473 taatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgaggttg 2920538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 43943762 - 43943666
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatttta 139  Q
    ||||| ||||||||| ||| || |||||   |||||||||||| |||||||||||||| |||| ||||||||| | ||| || |||| |||||||||    
T  43943762 tcggcagttaactaccgagtttttcctcgacagttaactgcagccggttattaaattcctcgagagttaactgctgagggggaaaaatcgtatttta 43943666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 34921759 - 34921860
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 142  Q
    ||||| ||||||||| |||||| ||||||| |||||||||||| ||||| || ||||  ||| ||||||||| |   || ||||||| ||||||||||||    
T  34921759 tcggcagttaactaccgaggttttcctcagcagttaactgcagccggtttttgaatttctcggcagttaact-accggggggcaaaaacgtattttactc 34921857  T
Q  143 gtg 145  Q
    |||    
T  34921858 gtg 34921860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 2917750 - 2917658
Alignment:
Q  49 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||||||||||||| ||||| | ||||||||| || ||||| || ||||  ||| ||||||||||   ||| ||||||| |||||||||||    
T  2917750 gttaactactgaggttttcctcggcagttaactgtagccggtttttcaatttctcggcagttaactgccgagggggcaaaaacgtattttact 2917658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 35493335 - 35493443
Alignment:
Q  37 aaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatt 136  Q
    |||| |||||| ||||||||| ||  || ||||| | ||||||||||||  |||| || ||||| ||| |||||||||    ||| ||||||||||||||    
T  35493335 aaattttcggcagttaactaccgatattttcctcggcagttaactgcagctggtttttgaattcctcggcagttaactaccgagggggcaaaagcgtatt 35493434  T
Q  137 ttactcgtg 145  Q
    |||||||||    
T  35493435 ttactcgtg 35493443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 2648233 - 2648088
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||| |||||||||| |||||||| |||||||||| || ||| |||||  |||||||| ||| || ||||| | |||||||| ||  | |||||| ||||    
T  2648233 taattgatgagagagtttctgccagatttgtagcagaagatcatcggcaattaactaccgagattttcctcggcagttaactacatacagttattgaatt 2648134  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    | ||||||  ||||||   ||  || |||| |||||||||||||||    
T  2648133 cctcgacaagtaactgtcgagacggaaaaaacgtattttactcgtg 2648088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 26543988 - 26544037
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggtt 91  Q
    |||||| ||||||||| |||||| ||||||| |||||||||||| |||||    
T  26543988 ttcggcagttaactaccgaggttttcctcagtagttaactgcagccggtt 26544037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 41183224 - 41183292
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaa 112  Q
    ||||| ||||||||| |||||| ||||| | |||||||||||| ||||| | |||||||||| |||||||    
T  41183224 tcggcagttaactaccgaggttttcctcggtagttaactgcagccggtt-tcaaattcttcggcagttaa 41183292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 29093792 - 29093872
Alignment:
Q  8 tgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtc 87  Q
    ||||||||||||||||| |||||||||| || ||| ||||| ||||||| |  ||||| ||||| | | ||||||||||||    
T  29093792 tgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgccaaggttttcctcggcaattaactgcagtc 29093872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 45475507 - 45475415
Alignment:
Q  49 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    ||||||||| |||||| ||||| | ||||||||| || ||||| || ||||  ||| ||||||||||   ||| ||||||| |||||||||||    
T  45475507 gttaactaccgaggttttcctcggcagttaactgtagccggtttttgaatttctcggcagttaactgccgagggggcaaaatcgtattttact 45475415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 41858080 - 41858223
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||||||||||||||| |||||||||| || ||| ||| | ||||||| | ||||||  |||| | |||||||||||| ||||| || ||||    
T  41858080 taatggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaactcccgaggtt--cctcggcagttaactgcagccggtttttgaatt 41858177  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    ||||| ||||||||||   ||| ||||||| |||||||||||||||    
T  41858178 cttcgccagttaactgccgagggggcaaaaacgtattttactcgtg 41858223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 18441398 - 18441539
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    ||||||||||||||| |||||||| |||||||||| || ||| ||||| ||||||| | |||||| | ||| | |||||||| || ||||||||| ||||    
T  18441398 taatggatgagagagtttctgccagatttgtagcagaagatcctcggcagttaactgccgaggtttttctcggcagttaactacaatcggttattgaatt 18441497  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
      ||| ||||||||||   ||| ||||||| |||||||||||    
T  18441498 tctcggcagttaactgccgagggggcaaaaacgtattttact 18441539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 41855435 - 41855342
Alignment:
Q  49 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 142  Q
    ||||||||| |||||| ||||| | |||||||||||| || || || ||||||||||||||||||||   ||||||||||| ||||||||||||    
T  41855435 gttaactaccgaggttttcctcggcagttaactgcagccgatttttgaattcttcgacagttaactgccgaggaggcaaaaacgtattttactc 41855342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 18438708 - 18438609
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||| ||||||| | |||||| ||||| | |||||||||||| |||||||| ||||| || |||||||||||   | | |||||||||||||||||||    
T  18438708 ttcggcagttaactcccgaggttttcctcggcagttaactgcagccggttattgaattcctcaacagttaactgccgaaggggcaaaagcgtattttact 18438609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 26451596 - 26451515
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaact 81  Q
    |||| ||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| |||||| ||||| | ||||||||    
T  26451596 taatagatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgaggttttcctcggcagttaact 26451515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 42602576 - 42602461
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||| | ||| || || ||||||| || || ||| ||||| ||||||||| |||||| ||||| | |||||||||||  ||||| || ||||    
T  42602576 taatggatgagacaacttatgtcagatttgtatcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactgcatccggtttttgaatt 42602477  T
Q  100 cttcgacagttaactg 115  Q
    ||||| ||||||||||    
T  42602476 cttcggcagttaactg 42602461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 18205859 - 18205757
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 142  Q
    ||||| ||||||||| |||||| ||||  | |||||||||||| ||||| || ||||||||| |||||||| |   ||| || |||| ||||||||||||    
T  18205859 tcggcagttaactaccgaggttttccttggcagttaactgcagccggtttttgaattcttcggcagttaaccgccgaggtggtaaaaacgtattttactc 18205760  T
Q  143 gtg 145  Q
    |||    
T  18205759 gtg 18205757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 40077250 - 40077352
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 142  Q
    ||||| ||||||||| |||||| ||||| | |||||||||||||||| | || ||| | | ||||||| || | | ||| ||||||| ||||||||||||    
T  40077250 tcggcagttaactaccgaggttttcctcggcagttaactgcagtcggatttttaataccttgacagtttaccgttgagggggcaaaaacgtattttactc 40077349  T
Q  143 gtg 145  Q
    |||    
T  40077350 gtg 40077352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 39751130 - 39751045
Alignment:
Q  59 gaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    |||||| ||||| | |||||||||||| ||||| | |||||| ||| ||||||| ||  |||| ||||||| |||||||||||||||    
T  39751130 gaggttttcctcggcagttaactgcagccggtt-tcaaattcatcggcagttaattgccaagggggcaaaaacgtattttactcgtg 39751045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 7168152 - 7168063
Alignment:
Q  52 aactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||| |||||| ||||| | |||||||||||| ||||| || ||||||||| ||| |||| |   ||| ||||||| |||||||||||    
T  7168152 aactaccgaggttttcctcggcagttaactgcagccggtttttgaattcttcggcagctaacagtcgagggggcaaaatcgtattttact 7168063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 42605233 - 42605306
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    |||||| ||||||||| || ||| || || | |||||||||||| || || || ||||||||||||||||||||    
T  42605233 ttcggcagttaactaccgatgttttcatcggcagttaactgcagccgatttttgaattcttcgacagttaactg 42605306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 12783914 - 12784055
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||||||||| | ||| |||||||||| || ||| ||||| |||||||||||||||| |||||   || ||||||||| |||||||| ||||    
T  12783914 taatggatgagagagctttttccagatttgtagcagaagatcctcggcagttaactactgaggttttcctcgacagctaactgcagccggttattgaatt 12784013  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    | ||| ||||||||||   | | |||||||||||||||||||    
T  12784014 catcggcagttaactgccgatggggcaaaagcgtattttact 12784055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 13401602 - 13401457
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    ||||||||||||||||||||| || |||||||||| || ||| ||||  |||||||||  |  || |||| || |||||||||||| || || || ||||    
T  13401602 taatggatgagagagcttctgtcatatttgtagcagaagatcctcggtagttaactaccaatattttccttagcagttaactgcagccgattttttaatt 13401503  T
Q  100 cttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    | ||| ||||||||||   ||| ||||||||| ||||| |||||||    
T  13401502 cctcggcagttaactgccgagggggcaaaagcatatttaactcgtg 13401457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 13404631 - 13404730
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||| |||||||||  ||||| ||| | | ||||||||||||  ||||||| ||||| |||||||||||||    ||| |||||| ||||||||||||    
T  13404631 ttcggcagttaactaccaaggttttccacggcagttaactgcagcaggttattgaattcctcgacagttaactaccgagggggcaaacgcgtattttact 13404730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26856011 - 26855977
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  26856011 taatggatgagagagcttctgccagatttgtagca 26855977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 29076323 - 29076395
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    ||||| ||||||||| |||||| ||||||| |||||||||||| ||| | |  ||  ||||||||||||||||    
T  29076323 tcggcagttaactaccgaggttttcctcagcagttaactgcagccggatttctaaaacttcgacagttaactg 29076395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 29109856 - 29109928
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    ||||| ||||||||| |||||| ||||||| |||||||||||| ||| | |  ||  ||||||||||||||||    
T  29109856 tcggcagttaactaccgaggttttcctcagcagttaactgcagccggatttctaaaacttcgacagttaactg 29109928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 29111296 - 29111368
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    ||||| ||||||||| |||||| ||||||| |||||||||||| ||| | |  ||  ||||||||||||||||    
T  29111296 tcggcagttaactaccgaggttttcctcagcagttaactgcagccggatttctaaaacttcgacagttaactg 29111368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 29700268 - 29700400
Alignment:
Q  10 agagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacag 108  Q
    ||||||||||||||| |||||||||| || ||| |||||  |||||||| |||||| ||||| | |||||||||||| |||||||| ||||| ||  |||    
T  29700268 agagagcttctgccagatttgtagcagaagatcatcggcaattaactaccgaggttttcctcggcagttaactgcagccggttattgaattcctcagcag 29700367  T
Q  109 ttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||||   ||||| |||||||||||||||||    
T  29700368 ttaactgtcgaggagacaaaagcgtattttact 29700400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 56138368 - 56138283
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcag 85  Q
    |||||||||||||||||||||||| |||||||||| || ||| ||||| |||||||||||||||| ||||| | ||||||||||||    
T  56138368 taatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactactgaggttttcctcggcagttaactgcag 56138283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 958551 - 958665
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||||||||||||||  |||||||||| || ||| ||||| ||||||||| |||||| ||||| | |||||||||||  ||||| || ||||    
T  958551 taatggatgagagagcttctgccggatttgtagcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactgcaaccggtttttgaatt 958650  T
Q  100 cttcgacagttaactg 115  Q
    | ||| ||||||||||    
T  958651 catcg-cagttaactg 958665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 37959719 - 37959822
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||| ||||||||| || ||| ||||| | ||||||||||||  ||||||||||||| || |||||||||||   ||| || |||| |||||||||||    
T  37959719 ttcggcagttaactaccgatgttttcctcggcagttaactgcagctggttattaaattcctcaacagttaactgccgagggggtaaaaacgtattttact 37959818  T
Q  142 cgtg 145  Q
    ||||    
T  37959819 cgtg 37959822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 44561287 - 44561378
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggtt 91  Q
    |||||||||||||||||||||||| |||||||||| |  ||| ||||| ||||||||| ||| || ||||| | |||||||||||| |||||    
T  44561287 taatggatgagagagcttctgccagatttgtagcagacgatcctcggcagttaactaccgagattttcctcggtagttaactgcagccggtt 44561378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 4786296 - 4786376
Alignment:
Q  6 gatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcag 85  Q
    ||||||||||||||| ||| |||||||||| || ||| ||||| |||||| || |||||| ||||||| ||||||||||||    
T  4786296 gatgagagagcttctaccagatttgtagcagaagatcatcggcagttaacaaccgaggttttcctcagtagttaactgcag 4786376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 11494617 - 11494515
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||| ||||||||| |||||| ||||| | |||||||||||| ||||| || ||||| ||||||||||| ||   ||| | ||||| |||||||||||    
T  11494617 ttcggcagttaactaccgaggttttcctcggcagttaactgcagccggtt-ttgaattcctcgacagttaattgccgaggggacaaaaacgtattttact 11494519  T
Q  142 cgtg 145  Q
    ||||    
T  11494518 cgtg 11494515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34530752 - 34530807
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaact 55  Q
    ||||||||||||||||||||||||||||||||||| || ||| ||||| |||||||    
T  34530752 taatggatgagagagcttctgccaaatttgtagcagaagatcctcggcagttaact 34530807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 6280924 - 6280858
Alignment:
Q  49 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    ||||||||| || ||| ||||||| | |||||||||| ||||| |||||||||| ||||||||||||    
T  6280924 gttaactaccgatgttttcctcagtatttaactgcagccggtttttaaattctttgacagttaactg 6280858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 955871 - 955767
Alignment:
Q  37 aaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatt 136  Q
    |||| |||||| ||||||||| |||||| | ||| | |||||||||||| || || || ||||| ||  ||||||||||  || ||||||||| ||||||    
T  955871 aaattttcggcagttaactaccgaggtttttctcggcagttaactgcagccgatttttgaattcctcagcagttaactgccaaagaggcaaaaacgtatt 955772  T
Q  137 ttact 141  Q
    |||||    
T  955771 ttact 955767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 8109458 - 8109362
Alignment:
Q  49 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    ||||||| | |||||| ||||| | ||||||||| || ||| |||| ||||| |||||||||||||   |||| || |||| |||||||||||||||    
T  8109458 gttaactcccgaggttttcctcggcagttaactgtagccggatatttaattcctcgacagttaactaccaagggggtaaaatcgtattttactcgtg 8109362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 33383879 - 33383807
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaact 114  Q
    |||||| ||||||| | |||||| ||||| | |||||||||||||||||| ||||| || |||||| ||||||    
T  33383879 ttcggcagttaacttccgaggttttcctcggcagttaactgcagtcggtttttaaaatcctcgacaattaact 33383807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 41023459 - 41023363
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatttta 139  Q
    ||||| ||||||||| |||| | ||||||| |||||||||||| ||| | | |||||  ||| ||||||||||  ||||||| |||| |||||||||    
T  41023459 tcggcagttaactaccgaggatttcctcagcagttaactgcagccggatttcaaatttctcggcagttaactgccaaggaggtaaaatcgtatttta 41023363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 49572910 - 49572998
Alignment:
Q  53 actactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    ||||| |||||| ||||| | |||||||||||| || ||||| ||||| ||||||||||||||   | | ||||||| |||||||||||    
T  49572910 actaccgaggttttcctcggcagttaactgcagccgattattgaattcctcgacagttaactgtcgatggggcaaaaacgtattttact 49572998  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39588182 - 39588127
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaact 55  Q
    |||||||||||||||||||||||| |||||||||| || ||| ||||| |||||||    
T  39588182 taatggatgagagagcttctgccatatttgtagcagaagatcctcggcagttaact 39588127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 56304966 - 56304919
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggc 47  Q
    |||||||||||||||||||||||| |||||||||| |||||| |||||    
T  56304966 taatggatgagagagcttctgccagatttgtagcagaaaatcctcggc 56304919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 1042050 - 1041936
Alignment:
Q  2 aatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattc 100  Q
    |||| |||||||||||| ||||| |||||||| | || ||| ||||| ||||||||| ||| || | ||| | |||||||||||||||| | |  |||||    
T  1042050 aatgaatgagagagcttatgccagatttgtagtagaagatcctcggcagttaactaccgagatttttctcggcagttaactgcagtcggatttctaattc 1041951  T
Q  101 ttcgacagttaactg 115  Q
     ||| ||||||||||    
T  1041950 ctcggcagttaactg 1041936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 9890067 - 9889969
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    ||||| ||||||||| |||||| ||||| | |||||||||||| ||| | | |||||| ||| ||||||||||   ||| || |||| |||||||||||    
T  9890067 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggggtaaaatcgtattttact 9889969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11287591 - 11287557
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  11287591 taatggatgagagagcttctgccacatttgtagca 11287557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 21470976 - 21470878
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    ||||| ||||||||| |||||| ||||| |  ||||||||||||| ||| || ||| | ||||||||||||||   || || ||||| |||||||||||    
T  21470976 tcggcagttaactaccgaggttttcctctgcggttaactgcagtcagtttttgaatacctcgacagttaactgccgagaagacaaaaacgtattttact 21470878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 51426616 - 51426538
Alignment:
Q  37 aaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    |||| |||||| |||||||||||||||| | ||| | | |||||||||| || || || ||||| ||||||||||||||    
T  51426616 aaattttcggcagttaactactgaggtttttctcggcaattaactgcagccgatttttgaattcctcgacagttaactg 51426538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 18578688 - 18578624
Alignment:
Q  77 taactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    ||||||||| || || || ||||| ||||||||||||||  ||||||||||||  ||||||||||    
T  18578688 taactgcagccgttttttgaattcctcgacagttaactgccaaggaggcaaaaatgtattttact 18578624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 21538495 - 21538539
Alignment:
Q  49 gttaactactgaggttgtcctcagaagttaactgcagtcggttat 93  Q
    ||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  21538495 gttaactgctgaagttttcctcagtagttaactgcagtcggttat 21538539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 42885567 - 42885484
Alignment:
Q  1 taatggatgagagagcttctgccaaa--tttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaact 81  Q
    |||||||||||||||||||||||| |  ||||||||| || ||| ||||| ||||||| | |||||| ||||||| | ||||||    
T  42885567 taatggatgagagagcttctgccagatttttgtagcagaagatcatcggcagttaactgccgaggttttcctcagtaattaact 42885484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 18307370 - 18307226
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    ||||||||||||| |||||||||| |||||||||| || ||| ||||| ||||||||| |||||| ||||| | |||||||| ||| || || || ||||    
T  18307370 taatggatgagagggcttctgccagatttgtagcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactacagccgattttttaatt 18307271  T
Q  100 cttcgacagttaactg-ataaggaggcaaaagcgtattttactcgt 144  Q
    | ||||||||||||||   ||||| |||||| ||||||||||||||    
T  18307270 cctcgacagttaactgccgaagga-gcaaaaacgtattttactcgt 18307226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 18310052 - 18310119
Alignment:
Q  74 agttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    ||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||| |||||||||||    
T  18310052 agttaactgcagtcggttattgaattcctcgacagttaactgctgaggaggcaaaaacgtattttact 18310119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 20192464 - 20192328
Alignment:
Q  6 gatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcg 104  Q
    ||||||||||||||||||| |||||||||| || ||| |||||  |||||||  || ||| ||||| | |||||||||||| || ||||| ||||||||     
T  20192464 gatgagagagcttctgccagatttgtagcagaagatcctcggcatttaactatcgaagttttcctcggcagttaactgcagccgattattgaattcttca 20192365  T
Q  105 acagttaactgataaggaggcaaaagcgtattttact 141  Q
     |||||||||||  | | ||||||| |||||||||||    
T  20192364 gcagttaactgacgaaggggcaaaatcgtattttact 20192328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 3603147 - 3603246
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    |||||| ||||||||| |||||| ||||| |||||||||||||| | |||||| ||||||||| ||||||||||   |||  |||||| |||||||||||    
T  3603147 ttcggcagttaactaccgaggttttcctcggaagttaactgcagccagttattgaattcttcggcagttaactgtcgagggagcaaaaacgtattttact 3603246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 34682324 - 34682232
Alignment:
Q  49 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    ||||||| | |||||| ||||| | |||||||||||| ||||| || ||||| ||||||||||||||  ||||  ||||||||||||||||||    
T  34682324 gttaactcccgaggttttcctcggcagttaactgcagccggtttttgaattcctcgacagttaactgtcaagggagcaaaagcgtattttact 34682232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 542747 - 542862
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaatt 99  Q
    |||||||||||||| ||||||||| |||||||||| || ||| ||||| ||||||||| |||  | ||||| | ||||| |||||| ||| | |  ||||    
T  542747 taatggatgagagaacttctgccagatttgtagcagaagatcctcggcagttaactaccgagagtttcctcggcagttagctgcagccggatttctaatt 542846  T
Q  100 cttcgacagttaactg 115  Q
    | ||||||||||||||    
T  542847 cctcgacagttaactg 542862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 18538335 - 18538433
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    ||||| ||||||||| || ||| ||||| | |||||||||||| ||||| || ||||| |||||| |||||||   ||| ||||||| |||||||||||    
T  18538335 tcggcagttaactaccgaagttttcctcggcagttaactgcagccggtttttgaattcctcgacaattaactgccgagggggcaaaatcgtattttact 18538433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 25497627 - 25497542
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcag 85  Q
    |||||||||||||||||||||||  |||||||||| || ||  ||||| ||||||||| ||| || ||||| | ||||||||||||    
T  25497627 taatggatgagagagcttctgcctgatttgtagcagaagattctcggcagttaactaccgagattttcctcggcagttaactgcag 25497542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 8702204 - 8702296
Alignment:
Q  49 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    ||||||||| |||||| ||||||| |||||||||||||| | | || ||||| ||| ||||||||||   |||  |||||| |||||||||||    
T  8702204 gttaactaccgaggttttcctcagcagttaactgcagtcagatttttaattcctcggcagttaactgtcgagggagcaaaatcgtattttact 8702296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 25499881 - 25499985
Alignment:
Q  37 aaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatt 136  Q
    |||| ||||||  ||||||||| ||||| ||||| | ||||||| |||  ||||| || ||||| |||| |||||||||   ||| ||||||||||||||    
T  25499881 aaattttcggcacttaactactaaggttttcctcggcagttaaccgcaaccggtttttgaattcctcgatagttaactgccgagggggcaaaagcgtatt 25499980  T
Q  137 ttact 141  Q
    |||||    
T  25499981 ttact 25499985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 41201795 - 41201699
Alignment:
Q  49 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 145  Q
    ||||||||| |||||| ||||| | |||||||||||| |||||||| ||||| |||||| |||| ||   ||  | ||||| |||||||||||||||    
T  41201795 gttaactaccgaggttttcctcggcagttaactgcagccggttattgaattcctcgacaattaattgtcgagaggacaaaatcgtattttactcgtg 41201699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 3600453 - 3600311
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttatta-aat 98  Q
    ||||| |||| ||| |||||| || |||||||||| || ||| ||||| ||||||||  |||||| ||||  | ||||||||||||  |||||||| |||    
T  3600453 taatgcatgaaagaacttctgtcagatttgtagcagaagatcctcggctgttaactatcgaggttttccttggcagttaactgcagctggttattataat 3600354  T
Q  99 tcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    | |||| ||||||||||   ||| ||||||| | |||||||||    
T  3600353 tattcggcagttaactgccgagggggcaaaaacatattttact 3600311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 11346124 - 11346038
Alignment:
Q  1 taatggatgagag-agcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcag 85  Q
    ||||||||||||| || |||||||| |||||||||| || ||| ||| | ||||||||| |||||| ||||| | ||||||||||||    
T  11346124 taatggatgagaggagattctgccagatttgtagcagaagatcctcgacagttaactaccgaggttttcctcggcagttaactgcag 11346038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 34123935 - 34124033
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 141  Q
    ||||| ||||||||| |||||| ||||  | |||||||||||| ||| | | |||||  ||||||||||||||   ||| ||||||| |||||||||||    
T  34123935 tcggcagttaactaccgaggttttccttggcagttaactgcagccggatttcaaatttctcgacagttaactgccgagggggcaaaatcgtattttact 34124033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42865761 - 42865795
Alignment:
Q  1 taatggatgagagagcttctgccaaatttgtagca 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  42865761 taatggatgagagagcttctgccagatttgtagca 42865795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 20200147 - 20200220
Alignment:
Q  42 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    |||||| ||||||||| || ||| ||||| | ||||||||||||| ||||||| ||||  | ||||||||||||    
T  20200147 ttcggcagttaactacagatgttttcctcggcagttaactgcagttggttattgaatttcttgacagttaactg 20200220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 12344 - 12430
Alignment:
Q  1 taatggatgagag-agcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcag 85  Q
    ||||||||||||| || |||||||| |||||||||| || ||| ||||| ||||||||| |||||| || || | ||||||||||||    
T  12344 taatggatgagagtagattctgccagatttgtagcagaagatcctcggcagttaactaccgaggttttcatcggcagttaactgcag 12430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 5344 - 5276
Alignment:
Q  43 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaa 112  Q
    ||||| ||||||||| |||||| ||||| | |||||||||||| ||||| | |||||||||| |||||||    
T  5344 tcggcagttaactaccgaggttttcctcggtagttaactgcagccggtt-tcaaattcttcggcagttaa 5276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 3951 - 3886
Alignment:
Q  50 ttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 115  Q
    |||||||| |||||| ||||| | |||||||||||| || || || ||||| ||||||||||||||    
T  3951 ttaactaccgaggttttcctcggcagttaactgcagccgatttttgaattcctcgacagttaactg 3886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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