View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7719_low_17 (Length: 408)
Name: NF7719_low_17
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 392
Target Start/End: Original strand, 37632505 - 37632884
Alignment:
| Q |
14 |
gacatcaaacaaaaatgacacactcctgcgtcgaaatcacataaaaacacgtaagtataattagatctatgtaaacaccgtttagttagataaaaagggt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37632505 |
gacatcaaacaaaaatgacacactcctgcgtcgaaatcacataaaaacacgtaagtataattagatctatgtaaacaccgtttagttagataaaaagggt |
37632604 |
T |
|
| Q |
114 |
agaaaaacaatgtggcgtacatttattctacatgcaattcatacttcttcatttttgttgtttttctcgatgaattaaaatattaaaaactctgccgcaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37632605 |
agaaaaacaatgtggcgtacatttattctacatgcaattcatacttctgcatttttgttgtttttctcgatgaattaaaatattaaaaactctgccgcaa |
37632704 |
T |
|
| Q |
214 |
gcatcacaacaagatacctctacccaccttctatgaagggttggaaaaggcttccactatatgtgctcgaa-gggggacaatacaccatacaaagtcata |
312 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
37632705 |
gcatcataacaagataactctacccaccttctatgaagggttggaaagggcttacactatatgtgctcgaaggggggacaatacaccatacacagtcata |
37632804 |
T |
|
| Q |
313 |
caccaatgacaaggcatacaaagataacccaaaaattgcctgccagagagtagccatacagaccaaaaacatgttgctaa |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37632805 |
caccaatgacaaggcatacaaagataaccccaaaattgcctgccagagagtagccatacaaaccaaaaacatgttgctaa |
37632884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 393
Target Start/End: Original strand, 28697333 - 28697452
Alignment:
| Q |
274 |
atgtgctcgaagggggacaatacaccatacaaagtcatacaccaatgacaaggcatacaaagataacccaaaaattgcctgccagagagtagccatacag |
373 |
Q |
| |
|
||||| ||||||| | |||||| | ||||||||| |||||||||||| ||||||||||||||||||| | | ||| || |||| |||| || |||||| |
|
|
| T |
28697333 |
atgtgttcgaaggtgtacaatagatcatacaaagacatacaccaatggcaaggcatacaaagataacaccgatattacccgccaaagagatgctatacag |
28697432 |
T |
|
| Q |
374 |
accaaaaacatgttgctaat |
393 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
28697433 |
accaaaaacaggttgctaat |
28697452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University