View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7719_low_2 (Length: 896)

Name: NF7719_low_2
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7719_low_2
NF7719_low_2
[»] chr4 (34 HSPs)
chr4 (366-754)||(53086126-53086514)
chr4 (67-280)||(4872136-4872349)
chr4 (67-291)||(56086444-56086669)
chr4 (83-280)||(45536378-45536575)
chr4 (83-310)||(23102596-23102823)
chr4 (754-884)||(33369908-33370038)
chr4 (207-312)||(44499857-44499962)
chr4 (61-141)||(45535038-45535118)
chr4 (67-141)||(23104051-23104125)
chr4 (67-153)||(56085345-56085431)
chr4 (753-858)||(33370820-33370925)
chr4 (207-312)||(47667313-47667420)
chr4 (68-159)||(19750319-19750410)
chr4 (68-159)||(19789396-19789487)
chr4 (207-312)||(29665448-29665555)
chr4 (67-126)||(49895038-49895097)
chr4 (207-323)||(46795889-46796007)
chr4 (66-159)||(44498457-44498550)
chr4 (207-299)||(3528325-3528422)
chr4 (67-143)||(4871492-4871568)
chr4 (417-477)||(32315736-32315796)
chr4 (207-312)||(38554064-38554171)
chr4 (207-323)||(49895179-49895293)
chr4 (208-299)||(39056564-39056657)
chr4 (207-312)||(56001142-56001250)
chr4 (208-299)||(41348375-41348467)
chr4 (207-312)||(52137564-52137671)
chr4 (207-284)||(36846459-36846538)
chr4 (69-159)||(44500010-44500100)
chr4 (207-280)||(26376445-26376519)
chr4 (208-299)||(35348936-35349029)
chr4 (207-299)||(26631102-26631197)
chr4 (67-99)||(31712668-31712700)
chr4 (208-280)||(1521089-1521162)
[»] chr3 (27 HSPs)
chr3 (67-310)||(44601647-44601890)
chr3 (67-299)||(53193094-53193322)
chr3 (67-199)||(48084940-48085071)
chr3 (67-159)||(53194637-53194729)
chr3 (67-159)||(10301844-10301936)
chr3 (70-194)||(54108540-54108664)
chr3 (207-312)||(48253068-48253175)
chr3 (67-153)||(7270321-7270407)
chr3 (191-289)||(48084637-48084735)
chr3 (70-159)||(46368809-46368898)
chr3 (207-323)||(14744201-14744317)
chr3 (207-309)||(47766828-47766932)
chr3 (207-299)||(10339876-10339970)
chr3 (67-141)||(44603086-44603160)
chr3 (207-312)||(10301690-10301796)
chr3 (67-159)||(10339996-10340087)
chr3 (208-291)||(54750337-54750423)
chr3 (70-144)||(48083228-48083302)
chr3 (67-159)||(10300937-10301030)
chr3 (208-323)||(5122449-5122565)
chr3 (67-139)||(54110329-54110401)
chr3 (207-291)||(53809388-53809474)
chr3 (208-291)||(7271485-7271571)
chr3 (67-136)||(7271642-7271711)
chr3 (103-159)||(10338772-10338828)
chr3 (417-477)||(43088782-43088842)
chr3 (110-153)||(46370206-46370249)
[»] chr8 (32 HSPs)
chr8 (70-280)||(7844712-7844920)
chr8 (64-280)||(35070562-35070778)
chr8 (66-159)||(39174753-39174846)
chr8 (207-312)||(24191515-24191621)
chr8 (65-159)||(32553933-32554027)
chr8 (67-159)||(39173114-39173206)
chr8 (70-159)||(35801005-35801094)
chr8 (67-159)||(32552294-32552386)
chr8 (67-159)||(10667967-10668059)
chr8 (67-159)||(35799450-35799541)
chr8 (207-323)||(38119-38238)
chr8 (70-144)||(24191378-24191452)
chr8 (70-158)||(24192690-24192778)
chr8 (209-323)||(42793839-42793955)
chr8 (69-136)||(10669494-10669561)
chr8 (207-298)||(39516384-39516478)
chr8 (218-323)||(45395879-45395985)
chr8 (211-299)||(22621022-22621111)
chr8 (207-299)||(43203164-43203258)
chr8 (226-279)||(24068472-24068526)
chr8 (228-312)||(10668114-10668199)
chr8 (208-281)||(35945344-35945417)
chr8 (208-298)||(31844507-31844599)
chr8 (217-290)||(7951935-7952009)
chr8 (209-337)||(38697296-38697423)
chr8 (207-253)||(7770132-7770178)
chr8 (207-253)||(7777809-7777855)
chr8 (207-253)||(7795902-7795948)
chr8 (207-253)||(7815179-7815225)
chr8 (207-269)||(9853705-9853767)
chr8 (95-136)||(28291321-28291362)
chr8 (83-124)||(38697067-38697108)
[»] chr1 (23 HSPs)
chr1 (83-312)||(27557563-27557793)
chr1 (61-159)||(6049450-6049548)
chr1 (207-343)||(6048055-6048190)
chr1 (67-141)||(27556268-27556342)
chr1 (67-159)||(3615245-3615337)
chr1 (67-159)||(6047917-6048008)
chr1 (69-201)||(17190553-17190685)
chr1 (69-144)||(9226256-9226331)
chr1 (211-299)||(26803104-26803193)
chr1 (209-299)||(48528780-48528873)
chr1 (62-153)||(52078126-52078217)
chr1 (69-159)||(52076531-52076621)
chr1 (211-299)||(40110540-40110629)
chr1 (67-159)||(3617523-3617615)
chr1 (207-310)||(12667148-12667253)
chr1 (209-323)||(40533463-40533580)
chr1 (417-477)||(15368669-15368729)
chr1 (207-312)||(51446714-51446821)
chr1 (399-526)||(42377932-42378059)
chr1 (211-280)||(5611877-5611947)
chr1 (104-158)||(26287811-26287865)
chr1 (209-250)||(9224922-9224963)
chr1 (208-280)||(26287680-26287753)
[»] chr5 (15 HSPs)
chr5 (420-618)||(12095099-12095297)
chr5 (754-884)||(32943516-32943646)
chr5 (208-310)||(10736811-10736915)
chr5 (755-858)||(32944429-32944532)
chr5 (211-309)||(1103842-1103942)
chr5 (69-159)||(9220486-9220576)
chr5 (209-300)||(4124897-4124991)
chr5 (212-290)||(8188098-8188176)
chr5 (219-297)||(9170779-9170858)
chr5 (399-470)||(22393560-22393631)
chr5 (80-126)||(24509095-24509141)
chr5 (207-312)||(224461-224571)
chr5 (208-272)||(9219315-9219380)
chr5 (208-281)||(22812293-22812366)
chr5 (83-124)||(32757839-32757880)
[»] chr7 (31 HSPs)
chr7 (762-884)||(32547710-32547832)
chr7 (65-208)||(48312630-48312773)
chr7 (208-344)||(29589114-29589247)
chr7 (70-159)||(3332183-3332272)
chr7 (67-159)||(9081391-9081483)
chr7 (755-872)||(32548604-32548721)
chr7 (1-66)||(42475992-42476057)
chr7 (207-321)||(3330830-3330942)
chr7 (207-323)||(17288103-17288223)
chr7 (85-159)||(29589296-29589370)
chr7 (66-159)||(16755868-16755961)
chr7 (66-159)||(44372726-44372819)
chr7 (66-159)||(44381582-44381675)
chr7 (67-148)||(48312022-48312103)
chr7 (207-323)||(35296680-35296796)
chr7 (67-136)||(3330690-3330759)
chr7 (67-159)||(44376714-44376806)
chr7 (67-159)||(44385581-44385673)
chr7 (208-323)||(41515132-41515249)
chr7 (207-310)||(666864-666968)
chr7 (2-66)||(42468535-42468599)
chr7 (207-300)||(45721652-45721747)
chr7 (207-295)||(43442651-43442741)
chr7 (208-299)||(10955984-10956077)
chr7 (67-124)||(16757420-16757477)
chr7 (421-477)||(3697314-3697370)
chr7 (207-280)||(28326297-28326371)
chr7 (400-478)||(35457342-35457422)
chr7 (208-280)||(32653602-32653674)
chr7 (207-282)||(41329373-41329448)
chr7 (95-136)||(669437-669478)
[»] chr2 (12 HSPs)
chr2 (67-159)||(23233722-23233814)
chr2 (66-155)||(23231537-23231626)
chr2 (399-496)||(18480089-18480186)
chr2 (207-312)||(4919965-4920072)
chr2 (207-312)||(45699667-45699774)
chr2 (209-323)||(19397670-19397786)
chr2 (399-469)||(32504903-32504973)
chr2 (417-475)||(40873545-40873603)
chr2 (83-126)||(2277528-2277571)
chr2 (83-126)||(34147150-34147193)
chr2 (399-478)||(44207491-44207570)
chr2 (208-288)||(1147888-1147969)
[»] chr6 (10 HSPs)
chr6 (70-198)||(30859459-30859587)
chr6 (67-159)||(18242336-18242427)
chr6 (67-159)||(18240398-18240490)
chr6 (382-515)||(9645584-9645717)
chr6 (382-515)||(9651601-9651734)
chr6 (208-308)||(11968343-11968444)
chr6 (208-280)||(18242214-18242287)
chr6 (219-288)||(30232803-30232872)
chr6 (682-750)||(4608846-4608915)
chr6 (417-518)||(4608593-4608694)
[»] scaffold0219 (1 HSPs)
scaffold0219 (207-323)||(7032-7146)
[»] scaffold1251 (1 HSPs)
scaffold1251 (83-126)||(1144-1187)
[»] scaffold0687 (1 HSPs)
scaffold0687 (207-253)||(6498-6544)


Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 366 - 754
Target Start/End: Original strand, 53086126 - 53086514
Alignment:
Q  366 ctatgttgcttttatcataagagaatagccggaaaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaa 465  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  53086126 ctatgttgcttttatcataaaagaatagccggaaaataaatttatagtaacaataagataattaacaaattgtcgaattcaacattataattaatagtaa 53086225  T
Q  466 aataaggcaaatcagtcattataaaacaaatatgcaacataaaagaaatccaaaaagaaatccaagtataaataattgttatccattataattagttgcc 565  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  53086226 aataaggcaaatcagtcattataaaacaaatatgcaacataaaataaatccaaaaagaaatccaagtataaatgattgttatccattataattagttgcc 53086325  T
Q  566 tacaagaactttgatgaaagcacaattagcaatgaatttaatctataaaacaaggagcttgaattggctttgacctttcttcaaggaatatttatgtaca 665  Q
    ||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53086326 tacaataactttactgaaagcacaattagcaatgaatttaatcgataaaacaaggagcttgaattggctttgacctttcttcaaggaatatttatgtaca 53086425  T
Q  666 agataacgctcaagtaatacatggagagatgcattgtgatttgtcggttatggatgagaaaaatataggcaagtattggatcaaagaaa 754  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53086426 agataacgctcaagtaatacatggagagatgcattgtgatttgtcggttatggatgagaaaaatataggcaagtattggatcaaagaaa 53086514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 67 - 280
Target Start/End: Complemental strand, 4872349 - 4872136
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaactaa 166  Q
    ||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||    
T  4872349 ggctaaattaatccaatggtccctcaactaattctcagttttcattttggtcccataagtcttaaaatcatcaatttggtccctcaacttctgaaacaaa 4872250  T
Q  167 tttcaaaaacgtcctttccgtcaaataagtaactgtgccgttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtca 266  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||  ||||||||||||||||| ||||||||||||    
T  4872249 tttcaaaatcgtcctttccgtcaaataagtaactgtgtcgttttttgatttcattttaaccattcgatcgaatgtccattgtatctaaagtgaaccgtca 4872150  T
Q  267 acacctaatttttt 280  Q
     |||||||||||||    
T  4872149 gcacctaatttttt 4872136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 67 - 291
Target Start/End: Complemental strand, 56086669 - 56086444
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaactaa 166  Q
    |||||||||||| ||||||||  ||| ||||||| || ||||||||||||||| |||||||||||||| |||| |||| | | ||||||| | |||| ||    
T  56086669 ggctaaattaattaaatggtcattcagctaattaccaattttcattttggtcctataagtcttaaaattatcattttggttcctcaacttctaaaacaaa 56086570  T
Q  167 tttcaaaaacgtcctttccgtcaaataagtaactgtgccgttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtca 266  Q
    |||||||||  |||||||||||||| |||||| |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  56086569 tttcaaaaagatcctttccgtcaaaaaagtaattgtgccattttttgatttgattttaaccattcgattgaatgtccattgtatctatagtgaatcgtca 56086470  T
Q  267 acacctaatt-ttttcacttttcatc 291  Q
     ||||||||| |||||||||||||||    
T  56086469 tcacctaatttttttcacttttcatc 56086444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 83 - 280
Target Start/End: Complemental strand, 45536575 - 45536378
Alignment:
Q  83 tggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaactaatttcaaaaacgtcctt 182  Q
    |||||||| ||||||||    |||||| |||||||||||||||||||||||||||||||  | ||| |||| || ||||||  | |||||||||||||||    
T  45536575 tggtcccttaactaattcttcgttttcgttttggtcccataagtcttaaaatcatcaatcgggtccctcaatttctgaaacagaattcaaaaacgtcctt 45536476  T
Q  183 tccgtcaaataagtaactgtgccgttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaatttttt 280  Q
    |||||| |||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  45536475 tccgtcgaataagtaactgtgccgttttttgatttgattttaaccgttcgattgaatatccattgtatctatagtgaaccgtcagcatctaatttttt 45536378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 83 - 310
Target Start/End: Original strand, 23102596 - 23102823
Alignment:
Q  83 tggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaactaatttcaaaaacgtcctt 182  Q
    |||||||| ||||||||    |||||| |||||||||||||||||||||||||||||||  | ||| |||| || |||||| || |||||||||||||||    
T  23102596 tggtcccttaactaattcttcgttttcgttttggtcccataagtcttaaaatcatcaatcgggtccctcaatttctgaaacaaaattcaaaaacgtcctt 23102695  T
Q  183 tccgtcaaataagtaactgtgccgttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaa-ttttttc 281  Q
    ||||| || |||||||||||||||||||||||||||||||||||| || |||| ||| |||||||| ||||||||||||||||| || |||| ||||||     
T  23102696 tccgtgaa-taagtaactgtgccgttttttgatttgattttaaccgttcgattgaatatccattgtttctatagtgaaccgtcagcatctaatttttttt 23102794  T
Q  282 acttttcatcctcttctccattcttcttc 310  Q
    | |||||||| |||||||  |||||||||    
T  23102795 atttttcatcatcttctctcttcttcttc 23102823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 754 - 884
Target Start/End: Original strand, 33369908 - 33370038
Alignment:
Q  754 aggtgggatttagcatggaaaaggatgtttgttttctatcataggaaagttaatgttagctattagatcaagtagagaactatataccctcaacactaga 853  Q
    |||||||||||||||||| ||| ||| ||||||| | | ||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  33369908 aggtgggatttagcatgggaaatgatatttgtttcccaccatgggaaagttaatgttagccattagatcaggtagagaactatacaccctcaacactaga 33370007  T
Q  854 ttattttgtcaccatcttctaccttcatctc 884  Q
    ||||||||| ||||||||| |||||||||||    
T  33370008 ttattttgtaaccatcttccaccttcatctc 33370038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 44499962 - 44499857
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaattttttcacttttcatcctcttctccattctt 306  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||  |||||    
T  44499962 ttttttgatttgattttaaccgtttgattgcatgtccattgtatctatagtgaaccgtcagcacctaatttttttatttttcatcatcttctctcttctt 44499863  T
Q  307 cttcct 312  Q
    ||||||    
T  44499862 cttcct 44499857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 45535038 - 45535118
Alignment:
Q  61 atttatggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaat 141  Q
    ||||| ||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  45535038 atttaaggctaaattaatcaaatagtccctcaactaattctcagttttcattttggtcccataagtcttaaaatcatcaat 45535118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 23104125 - 23104051
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaat 141  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||    
T  23104125 ggctaaattaatcaaatggtccctcaactaattctcagttttcattttggtctcataagtcttaaaatcatcaat 23104051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 56085345 - 56085431
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaa 153  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||| ||||    
T  56085345 ggctaaattaatcaaatggtccatcaactaattaccagttttcattttggtctcataagtcttaaaatcatcattttggtccctcaa 56085431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 753 - 858
Target Start/End: Complemental strand, 33370925 - 33370820
Alignment:
Q  753 aaggtgggatttagcatggaaaaggatgtttgttttctatcataggaaagttaatgttagctattagatcaagtagagaactatataccctcaacactag 852  Q
    |||||||| |||||||||| |||||||  |||||| | | ||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||    
T  33370925 aaggtggggtttagcatgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagatcaagtagagaattatacaccctcaacactag 33370826  T
Q  853 attatt 858  Q
    ||||||    
T  33370825 attatt 33370820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 47667313 - 47667420
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctccattc 304  Q
    |||||| || |||||||||||||||||||  ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| |||||||  |||    
T  47667313 tttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaatttttttcacttttcatcatcttctctcttc 47667412  T
Q  305 ttcttcct 312  Q
    ||||||||    
T  47667413 ttcttcct 47667420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 19750410 - 19750319
Alignment:
Q  68 gctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||| |||||||||| |||||||||||| |||  ||| ||||||||||    
T  19750410 gctaaattaatccaatggtccctcaactaattactagttttcattttgatcccataagttttaaaatcatcattttagtccttcaacttttg 19750319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 19789396 - 19789487
Alignment:
Q  68 gctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||| |||||||||| |||||||||||| |||  ||| ||||||||||    
T  19789396 gctaaattaatccaatggtccctcaactaattactagttttcattttgatcccataagttttaaaatcatcattttagtccttcaacttttg 19789487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 29665555 - 29665448
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctccattc 304  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||| || |||||||||||| |||||| |||||||||||||| || |||||||  |||    
T  29665555 ttttttgatgtgattttaaccatttgattgcatgtccattgtatctaattgtgaaccgtcaatacctaatttttttcacttttcttcatcttctctcttc 29665456  T
Q  305 ttcttcct 312  Q
    ||||||||    
T  29665455 ttcttcct 29665448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 49895038 - 49895097
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagt 126  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49895038 ggctaaattaatcaaatggtccctcaactaattaccagttttcattttggtcccataagt 49895097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 46796007 - 46795889
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctccattc 304  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| | |||||||||||||  ||||||| ||||||||||||||||| |||||||  |||    
T  46796007 ttttttgatatgattttaaccatttgattgcatgtccattgtatttaatagtgaaccgtcggcacctaatttttttcacttttcatcatcttctctcttc 46795908  T
Q  305 ttcttccttaaatcttcat 323  Q
    | |||||| | ||||||||    
T  46795907 tccttcctcatatcttcat 46795889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 44498457 - 44498550
Alignment:
Q  66 tggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||| |||||||||||||| |||||   ||||||| |||||||||||||| |||||||||||||| |||| ||| ||||||||||    
T  44498457 tggctaaattaatgaaatggtccctcaattaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtccctcaacttttg 44498550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 207 - 299
Target Start/End: Original strand, 3528325 - 3528422
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaat----tttttcacttttcatcctcttctc 299  Q
    |||||| || |||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||    |||||||||||||||| |||||||    
T  3528325 tttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcaacacctaattttatttttcacttttcatcatcttctc 3528422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 4871492 - 4871568
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaattt 143  Q
    ||||||||||||  ||||| |||||||||||||  || |||||||||||||| ||||||||||||||||||||||||    
T  4871492 ggctaaattaattcaatggcccctcaactaattcccaattttcattttggtctcataagtcttaaaatcatcaattt 4871568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 417 - 477
Target Start/End: Complemental strand, 32315796 - 32315736
Alignment:
Q  417 aacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaat 477  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  32315796 aacaagataattaacaaattgtcgaattcaacattataattaatagaaaaataaggcaaat 32315736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 38554064 - 38554171
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatcta-tagtgaaccgtcaacacctaatttt-ttcacttttcatcctcttctccattc 304  Q
    ||||||||| ||||||||||||||||||   | ||||||||||| || ||||||||||||| ||| ||||||| ||||||||||||| |||||||  |||    
T  38554064 ttttttgatatgattttaaccatttgatcgcacgtccattgtatttaatagtgaaccgtcatcacttaatttttttcacttttcatcatcttctctcttc 38554163  T
Q  305 ttcttcct 312  Q
    ||||||||    
T  38554164 ttcttcct 38554171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 49895179 - 49895293
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaattttttcacttttcatcctcttctccattct 305  Q
    ||||||||||||||| |||||||||||||  | |||| |||||||| |||||||||| |||||||||||||||||  |||||| || |||||||   |||    
T  49895179 ttttttgatttgattctaaccatttgattgcaggtccgttgtatctaatagtgaaccatcaacacctaatttttttccttttcttcatcttctc---tct 49895275  T
Q  306 tcttccttaaatcttcat 323  Q
    |||| |||| ||||||||    
T  49895276 tcttgcttagatcttcat 49895293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 39056564 - 39056657
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaatt-ttttcacttttcatcctcttctc 299  Q
    |||||||||||||||||||||||||||| | |||||||||  | | |||||| ||||||||||||||||| |||||||||| |||| |||||||    
T  39056564 tttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtggaccgtcaacacctaattgttttcactttccatcatcttctc 39056657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 56001250 - 56001142
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaatttttt--cacttttcatcctcttctccatt 303  Q
    |||||| || |||||||||||||||||||  ||||||||||||||| |||||||| ||||  |||||||||||||  ||||||||||| |||||||  ||    
T  56001250 tttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaatcgtcggcacctaatttttttccacttttcatcttcttctctctt 56001151  T
Q  304 cttcttcct 312  Q
    |||| ||||    
T  56001150 cttcctcct 56001142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 41348375 - 41348467
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatctatag-tgaaccgtcaacacctaattttttcacttttcatcctcttctc 299  Q
    |||||||| ||||||||| |||||||||  ||||||||||||| ||  | |||||| ||| |||||||||||||||||||||||| |||||||    
T  41348375 tttttgatatgattttaatcatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcacttttcatcatcttctc 41348467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 52137564 - 52137671
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaa--ttttttcacttttcatcctcttctccattc 304  Q
    ||||||||| ||||||||||| |||||||  ||||||||| ||  ||||||||||||||| || ||||  |||||||| |||||||| |||||||  |||    
T  52137564 ttttttgatatgattttaaccgtttgattgcatgtccattatacttatagtgaaccgtcagcagctaattttttttcatttttcatcatcttctctcttc 52137663  T
Q  305 ttcttcct 312  Q
    ||||||||    
T  52137664 ttcttcct 52137671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 36846538 - 36846459
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaat-tttttcact 284  Q
    |||||||||||||||||||||||||||||  ||||||||| ||| | | ||||||||||||||||||||| |||||||||    
T  36846538 ttttttgatttgattttaaccatttgattgcatgtccattatatttaacagtgaaccgtcaacacctaatatttttcact 36846459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 44500100 - 44500010
Alignment:
Q  69 ctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||| |||| ||||||||| |||||   ||||||| |||||||||||||| |||||||||||||| |||| ||| | ||||||||    
T  44500100 ctaaattaatgaaattgtccctcaattaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtcccttaacttttg 44500010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 26376445 - 26376519
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaatttttt 280  Q
    ||||||||| |||||||||||||||||||  |||| |||||||||| ||||| |||||| | |||||||||||||    
T  26376445 ttttttgatgtgattttaaccatttgattgcatgtacattgtatctaatagttaaccgtgagcacctaatttttt 26376519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 35348936 - 35349029
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaatt-ttttcacttttcatcctcttctc 299  Q
    |||||||||||||||||||||||||||| | |||||||||  | | |||||| ||||| | ||||||||| |||||||||| |||| |||||||    
T  35348936 tttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtggaccgttatcacctaattgttttcactttccatcatcttctc 35349029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 26631197 - 26631102
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa--ttttttcacttttcatcctcttctc 299  Q
    |||||||||||||||||||||| ||||||  ||||| ||||||| | | |||||| | ||| |||||||  ||||||||||||| ||| |||||||    
T  26631197 ttttttgatttgattttaaccacttgattgcatgtctattgtatttaacagtgaatcatcagcacctaattttttttcacttttaatcatcttctc 26631102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 31712668 - 31712700
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaatt 99  Q
    |||||||||||||||||||||||||||||||||    
T  31712668 ggctaaattaatcaaatggtccctcaactaatt 31712700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 1521162 - 1521089
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgta-tctatagtgaaccgtcaacacctaatttttt 280  Q
    ||||| |||| |||||||||||||||||  ||||||| |||| | ||  |||||||||||||| ||||||||||    
T  1521162 ttttttattttattttaaccatttgattgtatgtccaatgtattttaccgtgaaccgtcaacatctaatttttt 1521089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 3e-75; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 67 - 310
Target Start/End: Original strand, 44601647 - 44601890
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaactaa 166  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||| ||| ||||||||||||||||||||||  | ||| |||| || |||||| ||    
T  44601647 ggctaaattaatcaaatggtccctcaactaattctcagttttcattttagtctcataagtcttaaaatcatcaatcgggtccctcaatttctgaaacaaa 44601746  T
Q  167 tttcaaaaacgtcctttccgtcaaataagtaactgtgccgttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtca 266  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||    
T  44601747 attcaaaaacgtcatttccgtcaaataagtaactgtgccgttttttgatttgattttaaccgttcgattgaatatccattgtatctatagtgaaccgtca 44601846  T
Q  267 acacctaattttttcacttttcatcctcttctccattcttcttc 310  Q
     || |||||||||| | |||||||| || ||||  |||||||||    
T  44601847 gcatctaatttttttatttttcatcatcctctctcttcttcttc 44601890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 67 - 299
Target Start/End: Original strand, 53193094 - 53193322
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaactaa 166  Q
    |||||||||||||  ||||||||||||||||||| ||||||| ||||||| ||     |||| |||||||||| |||| ||| |||||||||||||| ||    
T  53193094 ggctaaattaatccgatggtccctcaactaattaccagtttttattttggccc-----gtctaaaaatcatcattttggtccttcaacttttgaaacaaa 53193188  T
Q  167 tttcaaaaacgtcctttccgtcaaataagtaactgtgccgttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtca 266  Q
    ||| |||||| || |||||||||||||||||||| || ||||||||||||||||||||| ||||  ||| ||||||||||||||||||||||||||||||    
T  53193189 ttttaaaaacatcatttccgtcaaataagtaactatgtcgttttttgatttgattttaatcattcaattgaatgtccattgtatctatagtgaaccgtca 53193288  T
Q  267 acaccta-attttttcacttttcatcctcttctc 299  Q
    |||||||  ||||||||||||||| | |||||||    
T  53193289 acacctattttttttcacttttcaccatcttctc 53193322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 48085071 - 48084940
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaactaa 166  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||||||| | |||||||||||||||||| |||| ||| ||||||| |||||| ||    
T  48085071 ggctaaattaatcaaatggtccctcaactaattctcagtttttattttggtctcttaagtcttaaaatcatcattttggtcc-tcaacttctgaaacaaa 48084973  T
Q  167 tttcaaaaacgtcctttccgtcaaataagtaac 199  Q
    |||||||||||||||||||||||||||||||||    
T  48084972 tttcaaaaacgtcctttccgtcaaataagtaac 48084940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 53194729 - 53194637
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| |||| ||| ||||||||||    
T  53194729 ggctaaattaatccaatggtccctcaactaattaccagttttcattttggttccataagttttaaaatcatcattttggtccttcaacttttg 53194637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 10301936 - 10301844
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||  |||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||    
T  10301936 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccataagtcttaaaatcatcaatatggtccttcaacttttg 10301844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 54108540 - 54108664
Alignment:
Q  70 taaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaactaattt 169  Q
    |||||||| | |||||||||||||||||||  |||||||| |||||||||||||||||||||||| |||| |||||||| | | ||||   ||| ||||     
T  54108540 taaattaacccaatggtccctcaactaattctcagttttcgttttggtcccataagtcttaaaattatcattttgatcccttatctttactaacgaatta 54108639  T
Q  170 caaaaacgtcctttccgtcaaataa 194  Q
    ||||| |||||||||||||||||||    
T  54108640 caaaagcgtcctttccgtcaaataa 54108664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 48253068 - 48253175
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctccattc 304  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||| ||||||||| |||||||||||| |||||||| ||||| || |||||||  |||    
T  48253068 ttttttgatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaactgtcaacacctaatttttttcatttttcttcatcttctctcttc 48253167  T
Q  305 ttcttcct 312  Q
    ||||||||    
T  48253168 ttcttcct 48253175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 7270321 - 7270407
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaa 153  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||| ||||||||||||||||||||| || |||| ||| ||||    
T  7270321 ggctaaattaatcaaatgatccctcaactaatttccagttttcatttttgtcccataagtcttaaaatcaacattttggtccctcaa 7270407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 191 - 289
Target Start/End: Complemental strand, 48084735 - 48084637
Alignment:
Q  191 ataagtaactgtgccgttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaattttttcacttttca 289  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| ||  |||    ||| |||||||||||||||||||||||    
T  48084735 ataagtaactgtgccattttttgatttgattttaaccattcgattgaatgtccattgtatttaatgtggtaggtcgacacctaattttttcacttttca 48084637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 46368809 - 46368898
Alignment:
Q  70 taaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||||||||||||| |||||||  ||| |||||||||||| |||||| ||||||||||||| |||||||| |||| |||||    
T  46368809 taaattaatcaaatggtccctcagctaattataagtattcattttggtctcataaggcttaaaatcatcattttgatccttcaatttttg 46368898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 14744201 - 14744317
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaattttttcacttttcatcctcttctccattctt 306  Q
    ||||||||| |||||||||||  ||||||  ||||||||| ||  ||||||||||| ||| |||||||||||||||||||||||| ||||| |  |||||    
T  14744201 ttttttgatatgattttaaccgattgattgcatgtccattatacatatagtgaaccatcagcacctaattttttcacttttcatcatcttccctgttctt 14744300  T
Q  307 cttccttaaatcttcat 323  Q
    |||||| | ||||||||    
T  14744301 cttcctcatatcttcat 14744317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 47766932 - 47766828
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctccattc 304  Q
    |||||| || |||||||||||||||||||  ||||||||||||||| |||||||||||||| ||||||| ||||||||||||| ||| |||||||  |||    
T  47766932 tttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaatttttttcacttttgatcatcttctctcttc 47766833  T
Q  305 ttctt 309  Q
    |||||    
T  47766832 ttctt 47766828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 10339970 - 10339876
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctc 299  Q
    |||||||||||||||| |||||||||||| |||||||||||||| | | |||||||||||| ||| ||| ||||||||||||||||| |||||||    
T  10339970 ttttttgatttgatttgaaccatttgattgaatgtccattgtatttaacagtgaaccgtcagcacataatttttttcacttttcatcatcttctc 10339876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 44603160 - 44603086
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaat 141  Q
    |||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||| ||||||||| ||||||    
T  44603160 ggctaaattaattaaatggtccctcaactaattttcagtttttattttggtcccataaatcttaaaataatcaat 44603086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 10301796 - 10301690
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctccattc 304  Q
    ||||||||||||||||||||||||||||| |||||||||||||| | | |||||||| ||| ||| ||| ||||||||| ||||||| |||||||  |||    
T  10301796 ttttttgatttgattttaaccatttgattgaatgtccattgtatttaacagtgaaccatcagcacataatttttttcac-tttcatcatcttctctcttc 10301698  T
Q  305 ttcttcct 312  Q
    ||||||||    
T  10301697 ttcttcct 10301690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 10340087 - 10339996
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||  |||||||||||||||||||  || |||||||||||||| ||||  ||||||||||||||| ||| ||| ||||||||||    
T  10340087 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtctcatatttcttaaaatcatcaa-ttggtccttcaacttttg 10339996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 291
Target Start/End: Complemental strand, 54750423 - 54750337
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgta-tctatagtgaaccgtcaacacctaatttttt--cacttttcatc 291  Q
    ||||||||||||||||||||||||||||  ||||||| |||| | || ||||||||||||||| ||||||||||  |||||||||||    
T  54750423 tttttgatttgattttaaccatttgattgtatgtccaatgtattttacagtgaaccgtcaacatctaatttttttccacttttcatc 54750337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 48083228 - 48083302
Alignment:
Q  70 taaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttg 144  Q
    ||||||| ||||||||||||| ||||||||  |||||||||||||| |||| ||||| |||||||||||| ||||    
T  48083228 taaattattcaaatggtcccttaactaattctcagttttcattttgatcccttaagttttaaaatcatcattttg 48083302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 10300937 - 10301030
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaa-cagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||  |||||||||| ||||||||   |||||||||||||||| |||||| |||||||||||||||| || ||| ||||| ||||    
T  10300937 ggctaaattaattcaatggtcccttaactaatttttcagttttcattttggttccataaatcttaaaatcatcaatctggtccctcaacgtttg 10301030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 208 - 323
Target Start/End: Original strand, 5122449 - 5122565
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaat-tttttcacttttcatcctcttctccattctt 306  Q
    ||||| || ||||||||||  ||| |||| ||||||||||||||| |||| |||| |||| ||||||| |||||||||||| ||| ||||| ||  ||||    
T  5122449 ttttttatatgattttaactgtttaattacatgtccattgtatctctagttaaccatcaatacctaatgtttttcacttttgatcatcttcccccgtctt 5122548  T
Q  307 cttccttaaatcttcat 323  Q
    |||||| | ||||||||    
T  5122549 cttcctcatatcttcat 5122565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 54110401 - 54110329
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatca 139  Q
    ||||| ||||||||||||||||||||| |||||  || |||||  ||||||| ||||||||||||||||||||    
T  54110401 ggctatattaatcaaatggtccctcaattaattctcaattttcgctttggtctcataagtcttaaaatcatca 54110329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 53809474 - 53809388
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa-ttttttcacttttcatc 291  Q
    ||||||||| | |||||||||||||||||  ||||| ||||||| | | |||||| ||||| ||||||| |||||||||||||||||    
T  53809474 ttttttgatataattttaaccatttgattgcatgtctattgtatttaacagtgaatcgtcagcacctaatttttttcacttttcatc 53809388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 291
Target Start/End: Complemental strand, 7271571 - 7271485
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgta-tctatagtgaaccgtcaacacctaa---ttttttcacttttcatc 291  Q
    |||||||||| |||||||||||||||||  |||||||||||| | ||||||||| ||||| | |||||   |||||||||||||||||    
T  7271571 tttttgatttaattttaaccatttgattgcatgtccattgtattttatagtgaatcgtcatc-cctaattgttttttcacttttcatc 7271485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 7271711 - 7271642
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatca 136  Q
    ||||||||||||| |||||||||||||||||||  || |||| |||||  || ||||||| |||||||||    
T  7271711 ggctaaattaatccaatggtccctcaactaatttccaatttttattttaatctcataagttttaaaatca 7271642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 10338772 - 10338828
Alignment:
Q  103 agttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||||||||||||| | |||||||||||| |||| ||| ||||| ||||    
T  10338772 agttttcattttggtcccataaattttaaaatcatcattttggtccctcaacgtttg 10338828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 477
Target Start/End: Original strand, 43088782 - 43088842
Alignment:
Q  417 aacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaat 477  Q
    |||||||||||||  ||||||| ||||||||||| |||| |||||| ||| ||||||||||    
T  43088782 aacaagataattatcaaattgtcgaattcaacatcataactaatagcaaattaaggcaaat 43088842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 153
Target Start/End: Complemental strand, 46370249 - 46370206
Alignment:
Q  110 attttggtcccataagtcttaaaatcatcaatttgatccgtcaa 153  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||    
T  46370249 attttggtcccataagtcttaaaatcatcattttggtccttcaa 46370206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 7e-73; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 70 - 280
Target Start/End: Original strand, 7844712 - 7844920
Alignment:
Q  70 taaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaactaattt 169  Q
    |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||| |||||    
T  7844712 taaattaatccaatggtcccttaactaattaccagttttcattttggtcccataagtcttaaaatcatcattttggtccctcaacttctgaaacaaattt 7844811  T
Q  170 caaaaacgtcctttccgtcaaataagtaactgtgccgttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaaca 269  Q
    |||||| ||| |||||||||||||||||||  ||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||    
T  7844812 caaaaatgtcatttccgtcaaataagtaac--tgccgtttttttatttgattttaaccattcgattgaatatccattgtatctatagtgaaccgtcagca 7844909  T
Q  270 cctaatttttt 280  Q
    |||||||||||    
T  7844910 cctaatttttt 7844920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 64 - 280
Target Start/End: Complemental strand, 35070778 - 35070562
Alignment:
Q  64 tatggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaac 163  Q
    ||||||||||||||||||||||||| |||  |||||| |||||||||||||||||  ||||||||||||||||||| |||| | | ||||||| ||||||    
T  35070778 tatggctaaattaatcaaatggtccttcagttaattaccagttttcattttggtcatataagtcttaaaatcatcattttggttcctcaacttctgaaac 35070679  T
Q  164 taatttcaaaaacgtcctttccgtcaaataagtaactgtgccgttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccg 263  Q
     |||||||||||  |||||||||| ||| |||||| |||| |||||||| |||||||||||| ||||  ||| |||||||||||||||||||||||||||    
T  35070678 aaatttcaaaaagatcctttccgttaaaaaagtaattgtgacgtttttttatttgattttaatcattctattgaatgtccattgtatctatagtgaaccg 35070579  T
Q  264 tcaacacctaatttttt 280  Q
    ||| |||||||||||||    
T  35070578 tcatcacctaatttttt 35070562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 39174846 - 39174753
Alignment:
Q  66 tggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||| |||||||||||| |||| ||| ||||||||||    
T  39174846 tggctaaattaatcaaatggtccctcaactaattataagttttcattttggtcctataagttttaaaatcatcattttggtccctcaacttttg 39174753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 24191515 - 24191621
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctccattct 305  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||| ||||||| |||||| | |||||||| |||||||  ||||    
T  24191515 ttttttgatttgattttaaccgtttgattgcatgtccattgtatctatagtgaaccgtcagcacctaattttttttatttttcatcatcttctctcttct 24191614  T
Q  306 tcttcct 312  Q
    |||||||    
T  24191615 tcttcct 24191621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 32554027 - 32553933
Alignment:
Q  65 atggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||| ||||||||||||||| ||| |||| ||| ||||||||||    
T  32554027 atggctaaattaatcaaatggtccctcaactaattacgagttttcattttgatcctataagtcttaaaatcgtcattttggtccctcaacttttg 32553933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 39173114 - 39173206
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||||||||||| ||| |||| ||| ||||||||||    
T  39173114 ggctaaattaatcaaatggtccctcaattaattacgagttttcattttggtcctataagtcttaaaatcgtcattttggtccctcaacttttg 39173206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 35801094 - 35801005
Alignment:
Q  70 taaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||| ||| |||  ||| ||||||||||    
T  35801094 taaattaatcaaatggtccctcaactaattacgagttttcattttggtcctataagtcttaaaatcgtcattttagtccctcaacttttg 35801005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 32552294 - 32552386
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||| ||| ||||||||||||||| ||| |||| ||| ||||||||||    
T  32552294 ggctaaattaatctaatggtccctcaactaattacgagttttcattttgatcctataagtcttaaaatcgtcattttggtccctcaacttttg 32552386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 10667967 - 10668059
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||| | ||||||||| || |||| ||| ||||| ||||    
T  10667967 ggctaaattaatcaaatggtccctcaactaatttcgagttttcattttggtcccataaattttaaaatcagcattttggtccctcaacatttg 10668059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 35799450 - 35799541
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||||||||||||| |||||||||||  ||||||||||||||||  |||||||||||||| |||| |||| ||| ||||||||||    
T  35799450 ggctaaattaatcaaatggtcc-tcaactaattacaagttttcattttggtcttataagtcttaaaattatcattttggtccctcaacttttg 35799541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 38119 - 38238
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaatttttt--cacttttcatcctcttctccatt 303  Q
    ||||||||| ||||||||||||||| |||  ||||||||||||| | | |||||||||||| |||||||||||||  ||||||||||| |||||||  ||    
T  38119 ttttttgatatgattttaaccatttaattgcatgtccattgtatttaacagtgaaccgtcagcacctaatttttttccacttttcatcatcttctctctt 38218  T
Q  304 cttcttccttaaatcttcat 323  Q
    || |||||| | ||||||||    
T  38219 ctccttcctcatatcttcat 38238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 24191378 - 24191452
Alignment:
Q  70 taaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttg 144  Q
    ||||||||||||||| ||||||||||||||   ||||||| |||||||||||||| |||||||||||||| ||||    
T  24191378 taaattaatcaaatgatccctcaactaatttcgagttttcgttttggtcccataactcttaaaatcatcattttg 24191452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 24192778 - 24192690
Alignment:
Q  70 taaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaactttt 158  Q
    ||||||||| |||||||||||||| |||||   ||||||| |||||||||||||| |||||||||||||| |||| ||  |||||||||    
T  24192778 taaattaattaaatggtccctcaattaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtctctcaactttt 24192690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 209 - 323
Target Start/End: Original strand, 42793839 - 42793955
Alignment:
Q  209 ttttgatttgattttaaccatttgattaaatgtccattgt-atctatagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctccattctt 306  Q
    ||||||| |||||||||||||| ||||  ||||||||||| ||  |||||||||| || |||||||| ||||||| ||||||||| |||||||  |||||    
T  42793839 ttttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaaccatcgacacctaatttttttcgcttttcatcatcttctctcttctt 42793938  T
Q  307 cttccttaaatcttcat 323  Q
    |||||| | ||||||||    
T  42793939 cttcctcatatcttcat 42793955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 10669561 - 10669494
Alignment:
Q  69 ctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatca 136  Q
    ||||||||||| ||| |||||||||||||||   |||||||||||||||||||||| |||||||||||    
T  10669561 ctaaattaatccaatagtccctcaactaattttgagttttcattttggtcccataaatcttaaaatca 10669494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 39516478 - 39516384
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa--ttttttcacttttcatcctcttct 298  Q
    |||||| || |||||||||||||||||||  ||||||||||||||| |||||||||||||| || ||||  |||||||| |||||||| ||||||    
T  39516478 ttttttcatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcatctaatcttttttcatttttcatcatcttct 39516384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 218 - 323
Target Start/End: Complemental strand, 45395985 - 45395879
Alignment:
Q  218 gattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaatt-ttttcacttttcatcctcttctccattcttcttccttaaa 316  Q
    |||||||||| |||||||  ||||||||||||| |||||| |||| ||  ||||||||| ||||||||||||||| ||||| |  ||||||||||| | |    
T  45395985 gattttaaccgtttgattgcatgtccattgtatatatagtaaaccatcggcacctaatttttttcacttttcatcatcttccctcttcttcttcctcata 45395886  T
Q  317 tcttcat 323  Q
    |||||||    
T  45395885 tcttcat 45395879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 22621111 - 22621022
Alignment:
Q  211 ttgatttgattttaaccatttgattaaatgtccattgtatctatag-tgaaccgtcaacacctaattttttcacttttcatcctcttctc 299  Q
    ||||| ||||||||| |||||||||  ||||||||||||| ||  | |||||| ||| |||||||||||||||||||||||| |||||||    
T  22621111 ttgatatgattttaatcatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcacttttcatcatcttctc 22621022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 43203258 - 43203164
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctc 299  Q
    ||||||||||| ||||||| |||||||||  ||||||||||||| | | |||||||  ||| ||||||| ||||||||||||||||| |||||||    
T  43203258 ttttttgatttaattttaaacatttgattgcatgtccattgtatttaaaagtgaactatcagcacctaatttttttcacttttcatcatcttctc 43203164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 24068472 - 24068526
Alignment:
Q  226 ccatttgattaaatgtccattgtatcta-tagtgaaccgtcaacacctaattttt 279  Q
    ||||||||||  |||||||||||||||| ||||||||||||| ||||||||||||    
T  24068472 ccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaattttt 24068526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 10668114 - 10668199
Alignment:
Q  228 atttgattaaatgtccattgtatctat-agtgaaccgtcaacacctaattttttcacttttcatcctcttctccattcttcttcct 312  Q
    |||||||| ||||||||||  |||||  ||||| |||||| ||| ||||||||||||||||| || |||||||  |||||||||||    
T  10668114 atttgattgaatgtccattaaatctaacagtgacccgtcagcacataattttttcacttttcttcatcttctctcttcttcttcct 10668199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 35945417 - 35945344
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaattttttc 281  Q
    |||||||| |||||| ||||||| ||||  | ||||||| ||| || |||| ||||||||||||||||||||||    
T  35945417 tttttgatgtgatttcaaccattcgattgcaggtccattatatttacagtgtaccgtcaacacctaattttttc 35945344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 31844507 - 31844599
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgt-atctatagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttct 298  Q
    ||||||||||||||||||||| ||||||  ||||| ||||| ||  | |||||||| ||| ||||||| ||||||||||||| ||| ||||||    
T  31844507 tttttgatttgattttaaccacttgattgcatgtctattgtaattaacagtgaaccatcagcacctaatttttttcacttttaatcatcttct 31844599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 7952009 - 7951935
Alignment:
Q  217 tgattttaaccatttgattaaatgtccattgtatct-atagtgaa-ccgtcaacacctaattttttcacttttcat 290  Q
    |||||||||| ||||||||| | ||||||||||| | |||||||| || ||||||||||| |||||||||||||||    
T  7952009 tgattttaactatttgattacaagtccattgtatttgatagtgaacccatcaacacctaa-tttttcacttttcat 7951935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 337
Target Start/End: Original strand, 38697296 - 38697423
Alignment:
Q  209 ttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaat-tttttcacttttcatcctcttctccattctt 306  Q
    ||||||| ||| |||||||||| ||||| ||||||||||| | | || ||||||||||| |  ||||| |||||||||||||||  |||||||  |||||    
T  38697296 ttttgatatgaatttaaccattagattatatgtccattgtttgtaatggtgaaccgtcagcggctaatgtttttcacttttcat-atcttctctcttctt 38697394  T
Q  307 cttccttaaatcttcatatcaaccttttcca 337  Q
    ||||||   ||||||  ||||||||||||||    
T  38697395 cttcctcgtatcttc--atcaaccttttcca 38697423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 7770132 - 7770178
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatcta 253  Q
    |||||| || |||||||||||||||||||  ||||||||||||||||    
T  7770132 tttttttatgtgattttaaccatttgattgtatgtccattgtatcta 7770178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 7777809 - 7777855
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatcta 253  Q
    |||||| || |||||||||||||||||||  ||||||||||||||||    
T  7777809 tttttttatgtgattttaaccatttgattgtatgtccattgtatcta 7777855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 7795902 - 7795948
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatcta 253  Q
    |||||| || |||||||||||||||||||  ||||||||||||||||    
T  7795902 tttttttatgtgattttaaccatttgattgtatgtccattgtatcta 7795948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 7815179 - 7815225
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatcta 253  Q
    |||||| || |||||||||||||||||||  ||||||||||||||||    
T  7815179 tttttttatgtgattttaaccatttgattctatgtccattgtatcta 7815225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 9853705 - 9853767
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaaca 269  Q
    ||||||||| | ||||||||| |||||||  || |||||| || |||||||||||||||||||    
T  9853705 ttttttgatataattttaaccgtttgattgcatatccattatacctatagtgaaccgtcaaca 9853767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 28291321 - 28291362
Alignment:
Q  95 taattaacagttttcattttggtcccataagtcttaaaatca 136  Q
    |||||| ||||||||||||||||||||||| || ||||||||    
T  28291321 taattatcagttttcattttggtcccataattcgtaaaatca 28291362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 38697108 - 38697067
Alignment:
Q  83 tggtccctcaactaattaacagttttcattttggtcccataa 124  Q
    ||||||||||| |||||  |||||||||||||||||||||||    
T  38697108 tggtccctcaattaatttccagttttcattttggtcccataa 38697067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 4e-53; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 83 - 312
Target Start/End: Complemental strand, 27557793 - 27557563
Alignment:
Q  83 tggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaactaatttcaaaaacgtcctt 182  Q
    |||||||| ||||||||    |||||| |||||||||||||||||||||||||||||||  | ||| |||| || | |||| || |||||||||||||||    
T  27557793 tggtcccttaactaattcttcgttttcgttttggtcccataagtcttaaaatcatcaatcgggtccctcaatttcttaaacaaaattcaaaaacgtcctt 27557694  T
Q  183 tccgtcaaataagtaactgtgccgttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaa-ttttttc 281  Q
    ||||||||||||||||||||||| ||||||||||||||||||||  || |||| ||| |||||| ||||||||||||||||||| || |||| ||||||     
T  27557693 tccgtcaaataagtaactgtgccattttttgatttgattttaactgttcgattgaatatccattatatctatagtgaaccgtcagcatctaatttttttt 27557594  T
Q  282 acttttcatcctcttctccattcttcttcct 312  Q
    | |||||||| |||||||  |||||||||||    
T  27557593 atttttcatcatcttctctcttcttcttcct 27557563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 6049548 - 6049450
Alignment:
Q  61 atttatggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||| |||| ||| ||||| ||||    
T  6049548 atttttggctaaattaatcaaatggtccctcaactaattaccagtttttattttggtctcataagtcctaaaatcatcattttggtccctcaacgtttg 6049450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 207 - 343
Target Start/End: Original strand, 6048055 - 6048190
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaattttttcacttttcatcctcttctccattct 305  Q
    ||||||||||||||| |||||||||||||  | ||||||||||||| |||||||||| |||||||||||||||||  |||||| || |||||||  ||||    
T  6048055 ttttttgatttgattctaaccatttgattggaggtccattgtatctaatagtgaaccatcaacacctaatttttttccttttcttcatcttctctcttct 6048154  T
Q  306 tcttccttaaatcttcatatcaaccttttccagaattt 343  Q
    |||| || | || |||  ||||| ||||||||||||||    
T  6048155 tcttgctcagattttc--atcaaacttttccagaattt 6048190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 27556268 - 27556342
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaat 141  Q
    |||||||||||| ||||||||||| ||||||||  ||||||| ||||||||||||||||||||||||||||||||    
T  27556268 ggctaaattaattaaatggtcccttaactaattctcagtttttattttggtcccataagtcttaaaatcatcaat 27556342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 3615245 - 3615337
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||||||||||||||||||||||||  ||| |||| |||||||||||||||| | |||||||||| |||| ||| ||||| ||||    
T  3615245 ggctaaattaatcaaatggtccctcaactaattctcagatttcgttttggtcccataagtataaaaatcatcattttggtccctcaacgtttg 3615337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 6047917 - 6048008
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| || ||| |||| |||| ||| ||||||||||    
T  6047917 ggctaaattaatcaaatgatccctcaactaattaccagttttaattttggtcccataagtcctataattatcattttggtcc-tcaacttttg 6048008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 17190553 - 17190685
Alignment:
Q  69 ctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaactaatt 168  Q
    ||||||||||||||| |||| ||||||||||  |||||||||||||| ||| |||||| |||||||||||| |||| | | | |||||||    |   ||    
T  17190553 ctaaattaatcaaattgtccttcaactaattttcagttttcattttgatcctataagttttaaaatcatcattttggtgcttaaacttttacttccgttt 17190652  T
Q  169 tcaaaaacgtcctttccgtcaaataagtaactg 201  Q
    ||||||||||| |||||||||||||||||||||    
T  17190653 tcaaaaacgtcttttccgtcaaataagtaactg 17190685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 9226331 - 9226256
Alignment:
Q  69 ctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttg 144  Q
    ||||||||||  |||||||||||||||||||  ||||||||||||||||||||||| | |||||||||||||||||    
T  9226331 ctaaattaattcaatggtccctcaactaattctcagttttcattttggtcccataaattttaaaatcatcaatttg 9226256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 26803193 - 26803104
Alignment:
Q  211 ttgatttgattttaaccatttgattaaatgtccattgtatctat-agtgaaccgtcaacacctaattttttcacttttcatcctcttctc 299  Q
    ||||| |||||||||||||||||||  ||||||||||||| ||  |||||||| ||| |||||||||||||||||||||||| |||||||    
T  26803193 ttgatatgattttaaccatttgattgcatgtccattgtatttaacagtgaaccttcaccacctaattttttcacttttcatcatcttctc 26803104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 48528873 - 48528780
Alignment:
Q  209 ttttgatttgattttaa-ccatttgattaaatgtccattgtatcta-tagtgaaccgtcaacacctaatt-ttttcacttttcatcctcttctc 299  Q
    ||||||||||||||||| ||||| ||||  ||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  48528873 ttttgatttgattttaaaccattagattgcatgtccattgtatttaatagtgaaccgtcaacacctaattattttcacttttcatcatcttctc 48528780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 52078217 - 52078126
Alignment:
Q  62 tttatggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaa 153  Q
    |||| ||||||||||||| ||| |||||||||||||||  || ||||| |||||||||||||||| | |||||||||| |||||||| ||||    
T  52078217 tttaaggctaaattaatctaatagtccctcaactaattctcaattttctttttggtcccataagtttaaaaatcatcattttgatccctcaa 52078126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 52076531 - 52076621
Alignment:
Q  69 ctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||| ||||  |||||||||| |||| ||| ||||| ||||    
T  52076531 ctaaattaatcaaatgatccctcaactaattctcagttttcgttttggtcccattagtccaaaaatcatcattttggtccctcaacgtttg 52076621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 40110629 - 40110540
Alignment:
Q  211 ttgatttgattttaaccatttgattaaatgtccattgtatctatag-tgaaccgtcaacacctaattttttcacttttcatcctcttctc 299  Q
    ||||| |||||||||||||||||||  ||||||||||||| ||  | |||||| ||| |||||||||||||||||||||||| |||||||    
T  40110629 ttgatatgattttaaccatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcacttttcatcatcttctc 40110540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 3617615 - 3617523
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||| || ||| ||||||||||||  |||||||| |||||||||||||||| | |||||||||| |||| ||| ||||| ||||    
T  3617615 ggctaaattaatccaacggttcctcaactaattctcagttttcgttttggtcccataagtttaaaaatcatcattttggtccctcaacgtttg 3617523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 207 - 310
Target Start/End: Complemental strand, 12667253 - 12667148
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaa--ttttttcacttttcatcctcttctccattc 304  Q
    ||||||||||||||||||| |||||||||  ||||| ||||||| |  |||||||||||| ||| |||  ||||||||||||||||  |||||||  |||    
T  12667253 ttttttgatttgattttaatcatttgattgcatgtctattgtatttccagtgaaccgtcagcacttaattttttttcacttttcattgtcttctctcttc 12667154  T
Q  305 ttcttc 310  Q
    ||||||    
T  12667153 ttcttc 12667148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 209 - 323
Target Start/End: Complemental strand, 40533580 - 40533463
Alignment:
Q  209 ttttgatttgattttaaccatttgattaaatgtccattgt-atctatagtgaaccgtcaacacctaatt--ttttcacttttcatcctcttctccattct 305  Q
    ||||||| |||||||||||||| ||||  ||||||||||| ||  |||||||||||||  |||||||||  ||||| ||||||||| |||||||  ||||    
T  40533580 ttttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaaccgtcggcacctaatttattttcgcttttcatcatcttctctcttct 40533481  T
Q  306 tcttccttaaatcttcat 323  Q
    ||||||| | ||||||||    
T  40533480 tcttcctgatatcttcat 40533463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 417 - 477
Target Start/End: Original strand, 15368669 - 15368729
Alignment:
Q  417 aacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaat 477  Q
    |||||||||||||  ||||||||||||||||||| |||| |||||| ||||||||||||||    
T  15368669 aacaagataattatcaaattgttgaattcaacatcataactaatagcaaaataaggcaaat 15368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 51446821 - 51446714
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaatttt--ttcacttttcatcctcttctccattc 304  Q
    ||||||||| ||||||||||  |||||||  ||||||||| || |||| ||||||||||| || ||||||||  |||| |||||||| |||||||  |||    
T  51446821 ttttttgatatgattttaactgtttgattgcatgtccattatacctattgtgaaccgtcagcatctaatttttgttcatttttcatcatcttctctcttc 51446722  T
Q  305 ttcttcct 312  Q
    ||||||||    
T  51446721 ttcttcct 51446714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 399 - 526
Target Start/End: Original strand, 42377932 - 42378059
Alignment:
Q  399 aaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatcagtcattataaaacaaatat 498  Q
    |||||||||| |  ||| |||||||||||||| ||||||||||| | ||| | ||| ||||||| ||||||||  |||||   ||  ||||||||||| |    
T  42377932 aaataaatttgtgataaaaacaagataattaacaaattgttgaactaaacgtcatacttaatagcaaaataagaaaaatccaccaacataaaacaaattt 42378031  T
Q  499 gcaacataaaagaaatccaaaaagaaat 526  Q
    ||||||||||| |||||| |||| ||||    
T  42378032 gcaacataaaacaaatcccaaaataaat 42378059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 5611877 - 5611947
Alignment:
Q  211 ttgatttgattttaaccatttgattaaatgtccattgta-tctatagtgaaccgtcaacacctaatttttt 280  Q
    |||||||||||||||||||||||||  ||||||| |||| | || ||||||||||||||| ||||||||||    
T  5611877 ttgatttgattttaaccatttgattgtatgtccaatgtattttacagtgaaccgtcaacatctaatttttt 5611947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 26287865 - 26287811
Alignment:
Q  104 gttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaactttt 158  Q
    ||||||||||||||||||||| || |||||||| || |||| ||| |||||||||    
T  26287865 gttttcattttggtcccataattcgtaaaatcaacattttggtccctcaactttt 26287811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 9224922 - 9224963
Alignment:
Q  209 ttttgatttgattttaaccatttgattaaatgtccattgtat 250  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  9224922 ttttgattttattttaaccattcaattaaatgtccattgtat 9224963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 26287753 - 26287680
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgta-tctatagtgaaccgtcaacacctaatttttt 280  Q
    ||||| ||||||||||||||||||||||  ||||||| |||| | ||  |||||| ||||||| ||||||||||    
T  26287753 ttttttatttgattttaaccatttgattgtatgtccaatgtattttaccgtgaactgtcaacatctaatttttt 26287680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 9e-51; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 420 - 618
Target Start/End: Complemental strand, 12095297 - 12095099
Alignment:
Q  420 aagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatcagtcattataaaacaaatatgcaacataaaagaaatccaaa 519  Q
    |||||| |||| ||||| | ||||||||||||||||||||||| |||||||||||||||   || |||||||||||| |||||||||||| ||| |||||    
T  12095297 aagatagttaacaaattctcgaattcaacattataattaatagaaaaataaggcaaatccaccaatataaaacaaatctgcaacataaaataaacccaaa 12095198  T
Q  520 aagaaatccaagtataaataattgttatccattataattagttgcctacaagaactttgatgaaagcacaattagcaatgaatttaatctataaaacaa 618  Q
    |||||||| ||| |||||||| |||||||||||||||||   ||||||||| ||||||||||||| ||||||||  |||||| |||||| |||||||||    
T  12095197 aagaaatcaaagaataaataactgttatccattataatttactgcctacaataactttgatgaaaacacaattattaatgaagttaatcaataaaacaa 12095099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 754 - 884
Target Start/End: Original strand, 32943516 - 32943646
Alignment:
Q  754 aggtgggatttagcatggaaaaggatgtttgttttctatcataggaaagttaatgttagctattagatcaagtagagaactatataccctcaacactaga 853  Q
    |||||||||||||||||| ||||||| ||||||| | | ||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  32943516 aggtgggatttagcatgggaaaggatatttgtttcccaccatgggaaagttaatgttagccattagatcaggtagagaactatacaccctcaacactaga 32943615  T
Q  854 ttattttgtcaccatcttctaccttcatctc 884  Q
    ||||||||| ||||||||| |||||||||||    
T  32943616 ttattttgtaaccatcttccaccttcatctc 32943646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 10736915 - 10736811
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctccattct 305  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| |||||||||||| |||| |||||||  ||||    
T  10736915 tttttgatttgattttaaccatttgattgaatgtccattgtatctaatagtgaaccgtcaacacttaatttttttcactttccatcatcttctctcttct 10736816  T
Q  306 tcttc 310  Q
    |||||    
T  10736815 tcttc 10736811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 755 - 858
Target Start/End: Complemental strand, 32944532 - 32944429
Alignment:
Q  755 ggtgggatttagcatggaaaaggatgtttgttttctatcataggaaagttaatgttagctattagatcaagtagagaactatataccctcaacactagat 854  Q
    |||||| |||||||||| ||| |||  |||||| | | ||| | ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  32944532 ggtggggtttagcatgggaaatgatacttgtttcccaccatggaaaagttaatgttagccattagattaagtagagaactatacaccctcaacactagat 32944433  T
Q  855 tatt 858  Q
    ||||    
T  32944432 tatt 32944429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 1103942 - 1103842
Alignment:
Q  211 ttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaatt-ttttcacttttcatcctcttctccattcttct 308  Q
    |||||||||||||||||||| ||||| ||| ||||||||| | ||||| |||||||||||||||||| |||| |||||||||| |||||||  |||||||    
T  1103942 ttgatttgattttaaccattagattacatgcccattgtatttaatagttaaccgtcaacacctaattatttttacttttcatcatcttctctcttcttct 1103843  T
Q  309 t 309  Q
    |    
T  1103842 t 1103842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 9220576 - 9220486
Alignment:
Q  69 ctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||  |||||||||||||||||||  |||||||||||||| ||||||||||||| ||||||  | |||| ||| ||||||||||    
T  9220576 ctaaattaattcaatggtccctcaactaatttccagttttcattttgttcccataagtcttgaaatcagaattttggtccctcaacttttg 9220486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 4124897 - 4124991
Alignment:
Q  209 ttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaatt--ttttcacttttcatcctcttctcc 300  Q
    ||||||||| |||||||||||||||||  || |||||||||| | |||||||||||||| ||||| |||  |||||| |||||||| ||||||||    
T  4124897 ttttgatttaattttaaccatttgattgtatatccattgtatttaatagtgaaccgtcagcacctgattaattttcatttttcatcatcttctcc 4124991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 8188176 - 8188098
Alignment:
Q  212 tgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaattttttcacttttcat 290  Q
    |||| |||||||||||||||||||  ||||||||| ||| | || ||||||| ||||||||||| |||||||||||||||    
T  8188176 tgatatgattttaaccatttgattgcatgtccattatatttaatggtgaaccatcaacacctaa-tttttcacttttcat 8188098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 9170858 - 9170779
Alignment:
Q  219 attttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttc 297  Q
    |||||||||||||||||  ||||||||| ||||||| || |||| ||| ||| ||| ||||||||||||||||| |||||    
T  9170858 attttaaccatttgattgcatgtccattatatctatggtaaaccatcagcacttaatttttttcacttttcatcatcttc 9170779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 470
Target Start/End: Original strand, 22393560 - 22393631
Alignment:
Q  399 aaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaataa 470  Q
    |||||||||| | |||| ||||||||||||||||| |||| ||| ||||||| ||| ||||||  |||||||    
T  22393560 aaataaatttgtcgtaaaaacaagataattaataagttgtcgaactcaacatcatacttaataacaaaataa 22393631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 24509141 - 24509095
Alignment:
Q  80 aaatggtccctcaactaattaacagttttcattttggtcccataagt 126  Q
    ||||||||||| || |||||| || ||||||||||||||||||||||    
T  24509141 aaatggtcccttaattaattaccaattttcattttggtcccataagt 24509095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 224571 - 224461
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa----ttttttcacttttcatcctcttctcca 301  Q
    ||||||||| ||| ||||||||||||||   | || |||||||| | |||||||||||||| |  ||||    ||||||||||||||||| |||||||      
T  224571 ttttttgatatgactttaaccatttgatcgcacgttcattgtatttaatagtgaaccgtcatcgtctaattttttttttcacttttcatcatcttctctc 224472  T
Q  302 ttcttcttcct 312  Q
    |||||||||||    
T  224471 ttcttcttcct 224461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 9219315 - 9219380
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacct 272  Q
    ||||| |||||||||||||| |||||||  |||| |||||||| | |||||||||| |||||||||    
T  9219315 ttttttatttgattttaaccgtttgattgcatgttcattgtatttaatagtgaaccttcaacacct 9219380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 22812366 - 22812293
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaattttttc 281  Q
    |||||||| |||||| ||||||| ||||  | ||||||| ||| || |||| |||| |||||||||||||||||    
T  22812366 tttttgatatgatttcaaccattcgattgcaggtccattatatttacagtgtaccgccaacacctaattttttc 22812293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 32757839 - 32757880
Alignment:
Q  83 tggtccctcaactaattaacagttttcattttggtcccataa 124  Q
    ||||||||||| |||||  |||||||||||||||||||||||    
T  32757839 tggtccctcaaataatttccagttttcattttggtcccataa 32757880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 8e-39; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 762 - 884
Target Start/End: Original strand, 32547710 - 32547832
Alignment:
Q  762 tttagcatggaaaaggatgtttgttttctatcataggaaagttaatgttagctattagatcaagtagagaactatataccctcaacactagattattttg 861  Q
    |||||||||| |||||||  |||||||| | ||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||    
T  32547710 tttagcatgggaaaggattcttgttttccaccataggaaagttaatgttagccattagatcaaatagagaactatagaccctcaacactagattattttg 32547809  T
Q  862 tcaccatcttctaccttcatctc 884  Q
    ||| ||||||| |||||||||||    
T  32547810 tcatcatcttccaccttcatctc 32547832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 48312773 - 48312630
Alignment:
Q  65 atggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaact 164  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||  | | ||||   |||     
T  48312773 atggctaaattaatcaaatggtctctcaactaattcacagttttcattttggtcccataaatcttaaaatcatcattttggtctcttatctttactaacg 48312674  T
Q  165 aatttcaaaaacgtcctttccgtcaaataagtaactgtgccgtt 208  Q
    ||||||||||  |||||||||||||||||  ||| |||||||||    
T  48312673 aatttcaaaagtgtcctttccgtcaaatagttaattgtgccgtt 48312630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 208 - 344
Target Start/End: Complemental strand, 29589247 - 29589114
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaattttttcacttttcatcctcttctccattcttc 307  Q
    ||||||||||||||||||||||||||||  || |||||| ||| ||||||||| ||||| ||| ||||||||| |||||||||| | |||||| ||||||    
T  29589247 tttttgatttgattttaaccatttgatttcatatccattatatttatagtgaatcgtcatcacttaatttttttacttttcatcat-ttctcccttcttc 29589149  T
Q  308 ttccttaaatcttcatatcaaccttttccagaatttg 344  Q
    || |||||||||||  |||||||||||||||||||||    
T  29589148 tttcttaaatcttc--atcaaccttttccagaatttg 29589114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 3332272 - 3332183
Alignment:
Q  70 taaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| ||| ||||| ||||    
T  3332272 taaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataaattctaaaatcatcaatttggtccctcaacgtttg 3332183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 9081391 - 9081483
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  9081391 ggctaaattaatccaatggtccctcaactaatttccggttttcattttggtcccataagtcataaaatcatcaatttgctccctcaacttttg 9081483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 755 - 872
Target Start/End: Complemental strand, 32548721 - 32548604
Alignment:
Q  755 ggtgggatttagcatggaaaaggatgtttgttttctatcataggaaagttaatgttagctattagatcaagtagagaactatataccctcaacactagat 854  Q
    |||||| ||||| |||| ||| |||  |||||| | | ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||    
T  32548721 ggtggggtttagtatgggaaatgatacttgtttcccaccatgggaaagttaatgttagccattagatcaagtagagaactatacaccctcaacattatat 32548622  T
Q  855 tattttgtcaccatcttc 872  Q
    ||||||||||| ||||||    
T  32548621 tattttgtcactatcttc 32548604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42475992 - 42476057
Alignment:
Q  1 gactactaatttattgatttaatcttttattttgagcttggtcggtcagtttagtatttcatttat 66  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  42475992 gactactaatttattgatttaatcttctattttgagcttggtcggtcggtttagtatttcatttat 42476057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 207 - 321
Target Start/End: Original strand, 3330830 - 3330942
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaattttttcacttttcatcctcttctccattctt 306  Q
    ||||||||||||||||||||| |||||||  |||| |||||||||||||||||||||||| ||| ||||||||  | |||||||| |||||||  |||||    
T  3330830 ttttttgatttgattttaaccgtttgattgcatgttcattgtatctatagtgaaccgtcagcacttaattttt--atttttcatcatcttctctcttctt 3330927  T
Q  307 cttccttaaatcttc 321  Q
    ||||||  |||||||    
T  3330928 cttcctctaatcttc 3330942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 17288223 - 17288103
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaatttttt---cacttttcatcctcttctccat 302  Q
    ||||||||| |||||||||| ||||||||  ||||||||||||| | |||||||||||||| |||||||||||||   ||||||||||| |||||||  |    
T  17288223 ttttttgatatgattttaactatttgattgcatgtccattgtatttaatagtgaaccgtcagcacctaattttttttccacttttcatcatcttctctct 17288124  T
Q  303 tcttcttccttaaatcttcat 323  Q
    ||| |||||| | ||||||||    
T  17288123 tctccttcctcatatcttcat 17288103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 29589370 - 29589296
Alignment:
Q  85 gtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||||||  |||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||||||    
T  29589370 gtccctcaactaattcccagttttcattttggtccaataagtcttaaaatcatcattttgctccctcaacttttg 29589296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 16755868 - 16755961
Alignment:
Q  66 tggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||||  |||||||||||||||||||  |||||||  |||||||||||||||| | |||||||||| |||||||| ||||| ||||    
T  16755868 tggctaaattaatttaatggtccctcaactaattctcagtttttgttttggtcccataagtttaaaaatcatcattttgatccctcaacgtttg 16755961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 44372726 - 44372819
Alignment:
Q  66 tggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||| ||||||||||||||||||||||   |||||||||||||||| ||||| ||||||||| |||| |||| ||| || |||||||    
T  44372726 tggctaaattagtcaaatggtccctcaactaatttcgagttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttg 44372819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 44381582 - 44381675
Alignment:
Q  66 tggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||| ||||||||||||||||||||||   |||||||||||||||| ||||| ||||||||| |||| |||| ||| || |||||||    
T  44381582 tggctaaattagtcaaatggtccctcaactaatttcgagttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttg 44381675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 48312022 - 48312103
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatcc 148  Q
    ||||| ||||||| |||||||||||||||||||  ||||| |||||||| |||||||| |||||||||||||| ||||||||    
T  48312022 ggctacattaatctaatggtccctcaactaattttcagttctcattttgatcccataaatcttaaaatcatcattttgatcc 48312103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 35296796 - 35296680
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaattttttcacttttcatcctcttctccattctt 306  Q
    ||||||||| ||||||||||| |||||||  ||||||||| ||  |||| ||| ||  || |||||||||||||||||||||||| ||||| | ||||||    
T  35296796 ttttttgatatgattttaaccgtttgattgcatgtccattatacatataatgagccaccagcacctaattttttcacttttcatcatcttccctattctt 35296697  T
Q  307 cttccttaaatcttcat 323  Q
    |||||| | ||||||||    
T  35296696 cttcctcatatcttcat 35296680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 3330690 - 3330759
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatca 136  Q
    |||||||||||||||||||||||||||||||||  |  |||||||||||||| | |||||||||||||||    
T  3330690 ggctaaattaatcaaatggtccctcaactaatttcccattttcattttggtctcttaagtcttaaaatca 3330759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 44376806 - 44376714
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||||||||||||||||||||||||   | ||||  |||||||||||||| | |||||||||||| |||| ||| | ||||||||    
T  44376806 ggctaaattaatcaaatggtccctcaactaatttcgaatttttgttttggtcccataacttttaaaatcatcattttggtcccttaacttttg 44376714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 44385673 - 44385581
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    |||||||||||||||||||||||||||||||||   | ||||  |||||||||||||| | |||||||||||| |||| ||| | ||||||||    
T  44385673 ggctaaattaatcaaatggtccctcaactaatttcgaatttttgttttggtcccataacttttaaaatcatcattttggtcccttaacttttg 44385581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 323
Target Start/End: Original strand, 41515132 - 41515249
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctccattct 305  Q
    ||||| || |||||||||||||||||||  ||||||||| ||| | |||||||||||||  ||||||| ||||||||||||||||  |||||||  ||||    
T  41515132 ttttttatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaatttttttcacttttcataatcttctctcttct 41515231  T
Q  306 tcttccttaaatcttcat 323  Q
     |||||| | ||||||||    
T  41515232 ccttcctcatatcttcat 41515249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 207 - 310
Target Start/End: Original strand, 666864 - 666968
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacct-aattttttcacttttcatcctcttctccattct 305  Q
    ||||||||||||||||||||||||| |||  ||||| ||| ||| |  |||||||||||| ||| | ||||||||||||||||||  |||||||  ||||    
T  666864 ttttttgatttgattttaaccatttaattgcatgtctattatatttccagtgaaccgtcagcacttaaattttttcacttttcattgtcttctctcttct 666963  T
Q  306 tcttc 310  Q
    |||||    
T  666964 tcttc 666968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 42468535 - 42468599
Alignment:
Q  2 actactaatttattgatttaatcttttattttgagcttggtcggtcagtttagtatttcatttat 66  Q
    ||||||||| ||| |||||||||||| |||||||||  ||||||||| |||||||||||||||||    
T  42468535 actactaatctatagatttaatctttgattttgagcacggtcggtcaatttagtatttcatttat 42468599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 207 - 300
Target Start/End: Complemental strand, 45721747 - 45721652
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctcc 300  Q
    |||||| || |||||||||||||||||||  |||| |||||||||| ||| ||||||||||  |||||| ||||||||||||| ||| ||||||||    
T  45721747 tttttttatgtgattttaaccatttgattgcatgttcattgtatctaataatgaaccgtcagtacctaatttttttcactttttatcatcttctcc 45721652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 43442741 - 43442651
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaat-tttttcacttttcatcctct 295  Q
    |||||||||||||||||||| ||||||||  |||||| |||||| | | |||||||||||| |||||||| |||||||||  |||||||||    
T  43442741 ttttttgatttgattttaacaatttgattgcatgtccgttgtatttaacagtgaaccgtcagcacctaatgtttttcactaatcatcctct 43442651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 10955984 - 10956077
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaatt-ttttcacttttcatcctcttctc 299  Q
    |||||||||||||||||||||||||||| | |||||||||  | | |||||| ||||| | ||||||||| |||||||||| |||| |||||||    
T  10955984 tttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtggaccgttagcacctaattgttttcactttccatcatcttctc 10956077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 16757477 - 16757420
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataa 124  Q
    |||||||||||||||||||||||||||||||||  || ||||| ||||| ||||||||    
T  16757477 ggctaaattaatcaaatggtccctcaactaattctcaattttcgttttgatcccataa 16757420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 421 - 477
Target Start/End: Original strand, 3697314 - 3697370
Alignment:
Q  421 agataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaat 477  Q
    |||||||||  ||||||||||||||||||| |||| |||||| ||||||||||||||    
T  3697314 agataattatcaaattgttgaattcaacatcataactaatagcaaaataaggcaaat 3697370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 280
Target Start/End: Complemental strand, 28326371 - 28326297
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatct-atagtgaaccgtcaacacctaatttttt 280  Q
    |||||| || |||||||||||||||||||  ||||||||| ||| | |||||||||||||  |||||||||||||    
T  28326371 ttttttaatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaatttttt 28326297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 478
Target Start/End: Complemental strand, 35457422 - 35457342
Alignment:
Q  400 aataaatttatagtaacaacaagataattaataaattgttgaattcaacat--tataattaatagtaaaataaggcaaatc 478  Q
    ||||||||| | |||| ||||| |||||||| ||||||||||| |||||||  |||||||||||| |||| |||| |||||    
T  35457422 aataaatttgtggtaaaaacaatataattaacaaattgttgaactcaacatcatataattaatagcaaaaaaaggaaaatc 35457342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 32653602 - 32653674
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaatttttt 280  Q
    |||||||| | ||||||||| |||||||  ||||||||| || ||| ||||||| |||| |||||||||||||    
T  32653602 tttttgatatcattttaaccgtttgattgcatgtccattatacctacagtgaactgtcagcacctaatttttt 32653674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 41329448 - 41329373
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaattttttca 282  Q
    ||||||||| |||| |||||| |||||||  ||||||||| || ||||||||| || ||  |||||||||||||||    
T  41329448 ttttttgatgtgatattaaccgtttgattgcatgtccattatacctatagtgagccatcggcacctaattttttca 41329373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 669478 - 669437
Alignment:
Q  95 taattaacagttttcattttggtcccataagtcttaaaatca 136  Q
    |||||| ||||||||||||||||||||||| || ||||||||    
T  669478 taattatcagttttcattttggtcccataattcgtaaaatca 669437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 23233814 - 23233722
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  23233814 ggctaaattaatcaaatggtccctcaactaattacaaattttcattttggtcccataagtcttaaaatcatcattttggtccctcaacttttg 23233722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 23231537 - 23231626
Alignment:
Q  66 tggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaact 155  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||| |||| ||| ||||||    
T  23231537 tggctaaattaatcaaatggtccctcaactaattacgagtttttattttggtcccataagtcttaaaatcatcattttggtccctcaact 23231626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 399 - 496
Target Start/End: Complemental strand, 18480186 - 18480089
Alignment:
Q  399 aaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatcagtcattataaaacaaat 496  Q
    |||||||||| | |||| |||||||||||||||||||||||||| ||||||| ||| ||||||| || |||||| ||||| ||| | |||||||||||    
T  18480186 aaataaatttgtggtaaaaacaagataattaataaattgttgaactcaacatcatatttaatagcaatataaggaaaatctgtcgtcataaaacaaat 18480089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 4919965 - 4920072
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaatttt--ttcacttttcatcctcttctccattc 304  Q
    ||||||||| ||||||||||| |||||||  ||||||||| || |||||||||||| ||| || ||||||||  |||| |||||||| |||||||  |||    
T  4919965 ttttttgatatgattttaaccgtttgattgcatgtccattatacctatagtgaaccatcagcatctaatttttgttcatttttcatcatcttctctcttc 4920064  T
Q  305 ttcttcct 312  Q
    ||||||||    
T  4920065 ttcttcct 4920072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 45699667 - 45699774
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaatttt--ttcacttttcatcctcttctccattc 304  Q
    ||||||||| ||||||||||  |||||||  ||||||||  || ||||||||||||||||||| ||||||||  |||| |||||||| |||||||  |||    
T  45699667 ttttttgatatgattttaactgtttgattgcatgtccatcatacctatagtgaaccgtcaacatctaatttttgttcatttttcatcatcttctctcttc 45699766  T
Q  305 ttcttcct 312  Q
    ||||||||    
T  45699767 ttcttcct 45699774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 209 - 323
Target Start/End: Original strand, 19397670 - 19397786
Alignment:
Q  209 ttttgatttgattttaaccatttgattaaatgtccattgtatcta-tagtgaaccgtcaacacctaatttttt-cacttttcatcctcttctccattctt 306  Q
    ||||||| | |||||||||||| ||||  ||||||||||||  || |||||||| ||| |||||||||||||| | ||||||||| |||||||  |||||    
T  19397670 ttttgatataattttaaccattggattgcatgtccattgtaattaatagtgaactgtcgacacctaatttttttcgcttttcatcatcttctctcttctt 19397769  T
Q  307 cttccttaaatcttcat 323  Q
    |||||| | ||||||||    
T  19397770 cttcctcatatcttcat 19397786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 399 - 469
Target Start/End: Complemental strand, 32504973 - 32504903
Alignment:
Q  399 aaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaata 469  Q
    |||||||||| | |||| ||||||||||||||||||||||  || ||||||| ||| ||||||| ||||||    
T  32504973 aaataaatttgttgtaaaaacaagataattaataaattgtcaaactcaacatcatatttaatagcaaaata 32504903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 475
Target Start/End: Complemental strand, 40873603 - 40873545
Alignment:
Q  417 aacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaa 475  Q
    |||||||||||||  ||||||| ||||||||||| |||| |||||| ||||||||||||    
T  40873603 aacaagataattatcaaattgtcgaattcaacatcataactaatagcaaaataaggcaa 40873545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 2277571 - 2277528
Alignment:
Q  83 tggtccctcaactaattaacagttttcattttggtcccataagt 126  Q
    ||||||||||| |||||  |||||||||||||||||||||||||    
T  2277571 tggtccctcaaataatttccagttttcattttggtcccataagt 2277528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 34147150 - 34147193
Alignment:
Q  83 tggtccctcaactaattaacagttttcattttggtcccataagt 126  Q
    ||||||||||| |||||  |||||||||||||||||||||||||    
T  34147150 tggtccctcaaataattttcagttttcattttggtcccataagt 34147193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 478
Target Start/End: Original strand, 44207491 - 44207570
Alignment:
Q  399 aaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatc 478  Q
    |||||||||  | |||| |||||||||||||||||||||| ||| | ||| | ||| ||||||| ||||||||| |||||    
T  44207491 aaataaattcgtggtaaaaacaagataattaataaattgtcgaactaaacgtcatacttaatagcaaaataaggaaaatc 44207570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 1147888 - 1147969
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatcta-tagtgaaccgtcaacacctaattttttcacttttc 288  Q
    |||||||| |||||||||||||  ||||  ||||||||| ||  || ||||||||| ||| || ||||||||||||||||||    
T  1147888 tttttgatatgattttaaccatccgattgcatgtccattctagttaatagtgaaccatcatcatctaattttttcacttttc 1147969  T

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Target: chr6 (Bit Score: 61; Significance: 1e-25; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 30859587 - 30859459
Alignment:
Q  70 taaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttgaaactaattt 169  Q
    ||||||||||||||||| | || |||||||| ||||||| |||||||| |||||| || ||| |||||||||||||||| ||||||| | |||| |||||    
T  30859587 taaattaatcaaatggtacttccactaattaccagtttttattttggttccataaatcctaacatcatcaatttgatccctcaacttctaaaacaaattt 30859488  T
Q  170 caaaaacgtcctttccgtcaaataagtaa 198  Q
     ||||| ||||||||  ||||||||||||    
T  30859487 taaaaatgtcctttcaatcaaataagtaa 30859459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 18242427 - 18242336
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtcttaaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||| ||| |||||||||||||||||   | |||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  18242427 ggctaaattaaccaa-tggtccctcaactaatttttaatttttattctggtcccataagtcttaaaatcatcaatttggtccctcaacttttg 18242336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 18240398 - 18240490
Alignment:
Q  67 ggctaaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataagtctt-aaaatcatcaatttgatccgtcaacttttg 159  Q
    ||||||||||||| || ||||| ||||||||||  |||||||||||||| ||||||| ||||| ||||||||||||||| ||| ||||||||||    
T  18240398 ggctaaattaatccaacggtcc-tcaactaattttcagttttcattttgatcccatatgtcttaaaaatcatcaatttggtccctcaacttttg 18240490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 515
Target Start/End: Complemental strand, 9645717 - 9645584
Alignment:
Q  382 ataagagaatagccggaaaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatcagt 481  Q
    |||| ||||||| ||  |||||||||| | |||| |||||||||||||| ||||||| ||| | || |||||| ||||||| |||| |||| ||||| |     
T  9645717 ataaaagaataggcgacaaataaatttgtggtaaaaacaagataattaacaaattgtcgaacttaaaattatacttaatagcaaaagaaggaaaatccgc 9645618  T
Q  482 cattataaaacaaatatgcaacataaaagaaatc 515  Q
    ||  ||||||||||| ||||||| |||| |||||    
T  9645617 caacataaaacaaatttgcaacaaaaaataaatc 9645584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 515
Target Start/End: Complemental strand, 9651734 - 9651601
Alignment:
Q  382 ataagagaatagccggaaaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatcagt 481  Q
    |||| ||||||| ||  |||||||||| | |||| |||||||||||||| ||||||| ||| | || |||||| ||||||| |||| |||| ||||| |     
T  9651734 ataaaagaataggcgacaaataaatttgtggtaaaaacaagataattaacaaattgtcgaacttaaaattatacttaatagcaaaagaaggaaaatccgc 9651635  T
Q  482 cattataaaacaaatatgcaacataaaagaaatc 515  Q
    ||  ||||||||||| ||||||| |||| |||||    
T  9651634 caacataaaacaaatttgcaacaaaaaataaatc 9651601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 11968444 - 11968343
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaa-ttttttcacttttcatcctcttctccattctt 306  Q
    ||||||||||||||||||||||||||||  ||||| ||| ||| |    |||||| |||||| |||| ||||||||||||||||| |||||||  |||||    
T  11968444 tttttgatttgattttaaccatttgattgcatgtctattatattttacatgaaccatcaacatctaatttttttcacttttcatcatcttctctcttctt 11968345  T
Q  307 ct 308  Q
    ||    
T  11968344 ct 11968343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 18242287 - 18242214
Alignment:
Q  208 tttttgatttgattttaaccatttgattaaatgtccattgta-tctatagtgaaccgtcaacacctaatttttt 280  Q
    ||||| |||| |||||||||||||||||  |||||||||||| | ||||||||||| ||| |||||||||||||    
T  18242287 tttttaatttaattttaaccatttgattgcatgtccattgtattttatagtgaaccatcatcacctaatttttt 18242214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 30232872 - 30232803
Alignment:
Q  219 attttaaccatttgattaaatgtccattgtatctatagtgaaccgtcaacacctaattttttcacttttc 288  Q
    |||||||||||  ||||  ||||||||||||  ||||||||||||||| ||||||||||||||| |||||    
T  30232872 attttaaccatccgattgcatgtccattgtagttatagtgaaccgtcatcacctaattttttcatttttc 30232803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 750
Target Start/End: Original strand, 4608846 - 4608915
Alignment:
Q  682 atacatggagagatgcattgtgatttgtcggttatggatga-gaaaaatataggcaagtattggatcaaa 750  Q
    |||||||||||||| ||||||||||| |  |||| |||||| |||||||| |||||||||||| ||||||    
T  4608846 atacatggagagatacattgtgatttatgagttacggatgaggaaaaatagaggcaagtattgtatcaaa 4608915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 518
Target Start/End: Original strand, 4608593 - 4608694
Alignment:
Q  417 aacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatcagtcattataaaacaaatatgcaacataaaagaaatcc 516  Q
    |||||||||||||| ||| |  |||||||||||| ||||||||||  | ||||||| ||||||  ||   ||||| |||| | |||||||||| ||||||    
T  4608593 aacaagataattaacaaaatcctgaattcaacatcataattaataacataataaggtaaatcaaccaaattaaaataaatctacaacataaaataaatcc 4608692  T
Q  517 aa 518  Q
    ||    
T  4608693 aa 4608694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 7032 - 7146
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatcta-tagtgaaccgtcaacacctaattttttcacttttcatcctcttctccattct 305  Q
    ||||||||| | ||||||||| |||||||  ||||||||| ||| || |||||||||||||||||||||||||||| ||||||||| ||||||    |||    
T  7032 ttttttgatataattttaaccgtttgattgcatgtccattatatttaatagtgaaccgtcaacacctaattttttcgcttttcatcatcttct---atct 7128  T
Q  306 tcttccttaaatcttcat 323  Q
    ||||||| ||||||||||    
T  7129 tcttcctcaaatcttcat 7146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 1187 - 1144
Alignment:
Q  83 tggtccctcaactaattaacagttttcattttggtcccataagt 126  Q
    ||||||||||| |||||  |||||||||||||||||||||||||    
T  1187 tggtccctcaaataatttccagttttcattttggtcccataagt 1144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 6544 - 6498
Alignment:
Q  207 ttttttgatttgattttaaccatttgattaaatgtccattgtatcta 253  Q
    |||||| || |||||||||||||||||||  ||||||||||||||||    
T  6544 tttttttatgtgattttaaccatttgattctatgtccattgtatcta 6498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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