View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_20 (Length: 375)
Name: NF7719_low_20
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 4653262 - 4652888
Alignment:
| Q |
1 |
tatattgaaaaaatgaattaattgaatgtaatcgcattcaatcaaaaaggtcatggaatcaccgacacatacatcatgtacttacatagacacgtcgaca |
100 |
Q |
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| T |
4653262 |
tatattgaaaaaatgaattaattgaatgtaatcgcattcaatcaaaaaggtcatggaatcaccgacacatacatcatgtacttccatagacacgtcgaca |
4653163 |
T |
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| Q |
101 |
tcaatgataatttgaaaaattatttaactgagtgcaatcacatgtgttagtgtcatgacgagcactgacgagtgtgctttccatttctatcagtattaat |
200 |
Q |
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| T |
4653162 |
tcaatgataatttgaaaaattatttaaatgagtacaatcacatgtgttagtgtcatgacgggcactgacgagtgtgctttccatttctatcagtattaat |
4653063 |
T |
|
| Q |
201 |
gactacttacttgactctatcaaagttgatacccattcttttgccaccatcttgaccaggtaagggattatagtaaccaagaacttcgaggtgctttcca |
300 |
Q |
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| T |
4653062 |
gactacttacttgactctatcaaagttgatacccattcttttgccaccatcttgaccaggtaagggattatagtaaccaagaacttcgaggtgctttcca |
4652963 |
T |
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| Q |
301 |
tctcttggagatctgctatcagaagccataacacggtagaatggcttgtttttgcaccctaaacacgaaactcga |
375 |
Q |
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| T |
4652962 |
tctcttggagatctgctatcagaagccataacacggtagaatggcttgtttttgcaccctaaacatgaaagtcga |
4652888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 192 - 364
Target Start/End: Complemental strand, 17427103 - 17426931
Alignment:
| Q |
192 |
agtattaatgactacttacttgactctatcaaagttgatacccattcttttgccaccatcttgaccaggtaagggattatagtaaccaagaacttcgagg |
291 |
Q |
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| T |
17427103 |
agtattaataactacttacttgactctatcaaagttgatacccattcttttgccaccatcttgaccaggtaagggattatagtaaccaagaacttcgagg |
17427004 |
T |
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| Q |
292 |
tgctttccatctcttggagatctgctatcagaagccataacacggtagaatggcttgtttttgcaccctaaac |
364 |
Q |
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| T |
17427003 |
tgctttccatctctcggagatctgctatcagcagccataacacggtaaaatggtttgtttttgcatcctaaac |
17426931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 17428908 - 17428840
Alignment:
| Q |
107 |
ataatttgaaaaattatttaactgagtgcaatcacatgtgttagtgtcatgacgagcactgacgagtgt |
175 |
Q |
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| T |
17428908 |
ataatttaaaaaattaactaattgaatgcaatcacatgtgttagtgtcataacgggcacttacgagtgt |
17428840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 24362338 - 24362371
Alignment:
| Q |
5 |
ttgaaaaaatgaattaattgaatgtaatcgcatt |
38 |
Q |
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| T |
24362338 |
ttgaaaaaatgaattaattgaatgtaatcacatt |
24362371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 10764120 - 10764088
Alignment:
| Q |
5 |
ttgaaaaaatgaattaattgaatgtaatcgcat |
37 |
Q |
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| T |
10764120 |
ttgaaaaaatgaattaattgaacgtaatcgcat |
10764088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 1118440 - 1118412
Alignment:
| Q |
5 |
ttgaaaaaatgaattaattgaatgtaatc |
33 |
Q |
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| T |
1118440 |
ttgaaaaaatgaattaattgaatgtaatc |
1118412 |
T |
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