View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_24 (Length: 338)
Name: NF7719_low_24
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 92 - 323
Target Start/End: Original strand, 4565961 - 4566192
Alignment:
| Q |
92 |
aaccacgtttccgaataactaaactcctaagatcgattcaacatcaaaatcgttcttatttgtcatacaaaccaacatcaaaatcatataattaattttt |
191 |
Q |
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| T |
4565961 |
aaccacgtttccgaataactaaactcctaagatcgattcaacatcaaaatcgttcttatttgtcatacaaaccaacatcaaaatcatataattaattttt |
4566060 |
T |
|
| Q |
192 |
atttattaatttttagcacatagcacgattttacactcatacctcatatatatggtatgctcttgacctggccatagataaggcaagatacaacttggcc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4566061 |
atttattaatttttagcacatagcacgattttacactcatacctcatatatatgctatgctcttgacctggccatagataaggcaagatacaacttggcc |
4566160 |
T |
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| Q |
292 |
ttgcccatacattgtacaaaaattattaatac |
323 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4566161 |
ttgcccatacattgtacaaaaattattaatac |
4566192 |
T |
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