View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_26 (Length: 328)
Name: NF7719_low_26
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 30526706 - 30527019
Alignment:
| Q |
1 |
gagacatgagaaggatggtcatagatcgaaaaggataaacagtacaattatttattctctgtaaacaccgaaatactataatgatcaactcttgaatcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30526706 |
gagacatgagaaggatggtcatagatcgaaaaggataaacagtacaattatttattctctgtaaacaccgaaatactataatgatcaactcttgaatcag |
30526805 |
T |
|
| Q |
101 |
tatattctctgtaaacagtacagttatttattctgaaatgtacttttgtataatcacattaatgatgaataatgaattctagcaattagtaatcagctaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30526806 |
tatattctctgtaaacagtacagttatttattctgaaatgtacttttgtctaatcacattaatgatgaataatgaattctagcaattagtaatcagctaa |
30526905 |
T |
|
| Q |
201 |
agctataatttaaggaatgcatgtgtgtatctgtgacattgccaatgatgtataacatagttcattttggttcaaatattatgtttagtccctgcaaaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30526906 |
agctataatttaaggaatgcatgtgtgtatctgtgacattgccaatgttgtataacatagttcattttggttcaaatattatgtttagtccctgcaaaat |
30527005 |
T |
|
| Q |
301 |
caaatgttttcagt |
314 |
Q |
| |
|
|||||||| ||||| |
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| T |
30527006 |
caaatgttgtcagt |
30527019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 30567046 - 30567359
Alignment:
| Q |
1 |
gagacatgagaaggatggtcatagatcgaaaaggataaacagtacaattatttattctctgtaaacaccgaaatactataatgatcaactcttgaatcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30567046 |
gagacatgagaaggatggtcatagatcgaaaaggataaacagtacaattatttattctctgtaaacaccgaaatactataatgatcaactcttgaatcag |
30567145 |
T |
|
| Q |
101 |
tatattctctgtaaacagtacagttatttattctgaaatgtacttttgtataatcacattaatgatgaataatgaattctagcaattagtaatcagctaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30567146 |
tatattctctgtaaacagtacagttatttattctgaaatgtacttttgtctaatcacattaatgatgaataatgaattctagcaattagtaatcagctaa |
30567245 |
T |
|
| Q |
201 |
agctataatttaaggaatgcatgtgtgtatctgtgacattgccaatgatgtataacatagttcattttggttcaaatattatgtttagtccctgcaaaat |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30567246 |
agctataatttaaggaatgcatgtgtgtatctgtgacattgccaatgttgtataacatagttcattttggttcaaatattatgtttagtccctgcaaaat |
30567345 |
T |
|
| Q |
301 |
caaatgttttcagt |
314 |
Q |
| |
|
|||||||| ||||| |
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| T |
30567346 |
caaatgttgtcagt |
30567359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 77 - 312
Target Start/End: Complemental strand, 30426020 - 30425784
Alignment:
| Q |
77 |
tataatgatcaactcttgaatcagtatattctctgtaaacagtacagttatttattctgaaatgtacttttgtataatcacattaatgatgaataatgaa |
176 |
Q |
| |
|
||||| |||||||||||||| ||||||||| || ||||||||| || ||||||||| |||||||| ||||||| ||||||||||| ||| ||||||||| |
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|
| T |
30426020 |
tataaggatcaactcttgaaacagtatattttcggtaaacagtgcaattatttattgtgaaatgtgcttttgtctaatcacattagtgagaaataatgaa |
30425921 |
T |
|
| Q |
177 |
ttctagcaattagtaatcagctaaagctataatttaaggaatgcatgtgtgtatctgtgacattgccaatgatgtataacatagttcattttgg-ttcaa |
275 |
Q |
| |
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|||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||| |||||| || || |
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|
| T |
30425920 |
ttctagaaattagtaatcaactaaagctacaatttaaggaatgcatgtgtgtatctgtgacattgctaatgatggatagcataattctttttggtttaaa |
30425821 |
T |
|
| Q |
276 |
atattatgtttagtccctgcaaaatcaaatgttttca |
312 |
Q |
| |
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|||||| | ||||||| |||||||||||||||||||| |
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|
| T |
30425820 |
atattacggttagtccttgcaaaatcaaatgttttca |
30425784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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