View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_27 (Length: 324)
Name: NF7719_low_27
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 3 - 306
Target Start/End: Complemental strand, 11098383 - 11098077
Alignment:
| Q |
3 |
tcgaatcacgagtgatatcatttactcaaaagtagcatgagcacaatggagaaaaggaaaagcaaaattacatataattttcaacataaatgtaaataaa |
102 |
Q |
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| T |
11098383 |
tcgaatcacgagtgatatcatttactctaaagtagcatgagcacaatggagaaaaggaaaagcaaaattacatataactttcaacataaatgtaaataaa |
11098284 |
T |
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| Q |
103 |
ttatttcatgtgacattgaaattcaaaagtaactttgacaatcgatcacaagaggtaaattggaaaaacctaattcccaatcacactcttcttgttttat |
202 |
Q |
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| T |
11098283 |
ttatttcatgtgacattgaaattc-aaagtaactttaacaaccgatgacaagaggtaaattggaaaaacctaattcccaatcacactcttcttgttttat |
11098185 |
T |
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| Q |
203 |
tttaagtaagtagtttaca----atagtttacccttccaagcacgttacctaatttagaatgagcttaaaagttcatctttagatgcaccaccagataat |
298 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11098184 |
tttaagtaagtagtttacaatatatagtttacccttccaagcacgttaactaatttagaatgagcttaaaagttcatcttttgatgcaccaccagataat |
11098085 |
T |
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| Q |
299 |
ccagagga |
306 |
Q |
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|||||||| |
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| T |
11098084 |
ccagagga |
11098077 |
T |
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