View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_28 (Length: 321)
Name: NF7719_low_28
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 28265964 - 28266266
Alignment:
| Q |
1 |
aatgattttgttaattttttaattacgaaattgaccttcattttttgagtattttgtcaagattattatcatgcttaaatttgaaattttgttgtgttac |
100 |
Q |
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| T |
28265964 |
aatgattttgttaattttttaattacgaaattgaccttcattttt-gagtattttgtcaagattattatcatgcttaaatttgaaattttgttgtgttac |
28266062 |
T |
|
| Q |
101 |
tctgtatctctattgtaatgtatggaaaattggaattcacttgtgatgtaaggtgattggtgattatatgcaatgttatattttatttgcttgattgcgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28266063 |
tctgtatctctattgtaatgtatggaaaattggaattcacttgcgatgt-----gattggtgattatatgcaatgttatattttatttgcttgattgtgt |
28266157 |
T |
|
| Q |
201 |
tttctttaattttattgatcttgtactttaaaaatgatgttctattttcaactcgttattgtgcagttaactccgcattccgataatggattcatattct |
300 |
Q |
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| T |
28266158 |
tttctttaattttattgatcttgtactttaaaaatgatgttctattttcaactcgttattgtgcagttaactccgcattcccataatggattcatattct |
28266257 |
T |
|
| Q |
301 |
ttgatgtcc |
309 |
Q |
| |
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|||| |||| |
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| T |
28266258 |
ttgaagtcc |
28266266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 26655824 - 26655707
Alignment:
| Q |
1 |
aatgattttgttaatt-ttttaattacgaaattgaccttcattttttgagtattttgtcaagattattatcatgcttaaatttgaaattttgttgtgtta |
99 |
Q |
| |
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|||||||||||| ||| |||| | || |||||| ||||||||| | | ||| |||||||||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
26655824 |
aatgattttgttgattctttttactatgaaattaaccttcattgtgtaagt-ttttgtcaagattattatcatgcttaaagttgacattttattgtgtta |
26655726 |
T |
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| Q |
100 |
ctctgtatctctattgtaa |
118 |
Q |
| |
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|| |||||||||||||||| |
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| T |
26655725 |
ctttgtatctctattgtaa |
26655707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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