View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7719_low_29 (Length: 308)
Name: NF7719_low_29
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 29356188 - 29356453
Alignment:
| Q |
18 |
gatacatcattccatcatgacctgttttccttgcttatttagcaagacatcgtcttcttcaagacaaaatccagacaatgatgaaggtaagaaaactaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29356188 |
gatacatcattccatcatgacctgttttccttgcttatttagcaagacatcgtcttcttcaagacaaaatccagacaatgatgaaggtaagaaaactaac |
29356287 |
T |
|
| Q |
118 |
aaattacaattgataagaccgagctagcgtttcaagggtaatcttgtaagctaaaccgcagtatttaaccctaaccttgaatagtaggcatgcaaccact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29356288 |
aaattacaattgataagaccgagctagcgtttcaagggtaatcttgtaagctaaaccgcagtatttaaccctaaccttgaatagtaggcatgcaaccact |
29356387 |
T |
|
| Q |
218 |
ctatagtcggagacatgggcacaattgaccgaaatctattatcaaatttcctgtgttttctgtttg |
283 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29356388 |
ctatagtcggagacgtggacacaattgaccgaaatctattatcaaatttcctgtgttttctgtttg |
29356453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 29362854 - 29362969
Alignment:
| Q |
18 |
gatacatcattccatcatgacctgttttccttgcttatttagcaagacatcgtcttcttcaagacaaaatccagacaatgatgaaggtaagaaaactaac |
117 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| || || || |||||| |||||||||||||||| |||||||||| ||||||||||||| ||||||| |
|
|
| T |
29362854 |
gatacatcattccgtcatgacctgtttccctttctcgttcagtaagacaccgtcttcttcaagacagcatccagacaacgatgaaggtaagataactaac |
29362953 |
T |
|
| Q |
118 |
aaattacaattgataa |
133 |
Q |
| |
|
||||| |||| ||||| |
|
|
| T |
29362954 |
aaattgcaatagataa |
29362969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 25530430 - 25530364
Alignment:
| Q |
216 |
ctctatagtcggagacatgggcacaattgaccgaaatctattatcaaatttcctgtgttttctgttt |
282 |
Q |
| |
|
||||| |||||||| ||| || ||||||| ||||| ||| ||||||||| || |||||||||||||| |
|
|
| T |
25530430 |
ctctacagtcggaggcatagggacaattggccgaactctgttatcaaatatcgtgtgttttctgttt |
25530364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University