View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7719_low_3 (Length: 713)

Name: NF7719_low_3
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7719_low_3
NF7719_low_3
[»] chr4 (1 HSPs)
chr4 (19-713)||(22015949-22016642)
[»] chr2 (4 HSPs)
chr2 (364-467)||(40059108-40059211)
chr2 (364-467)||(40077136-40077239)
chr2 (364-467)||(40085046-40085149)
chr2 (248-297)||(5453660-5453709)
[»] chr8 (2 HSPs)
chr8 (251-298)||(16657507-16657554)
chr8 (563-595)||(34489298-34489330)
[»] chr3 (3 HSPs)
chr3 (26-63)||(40097577-40097614)
chr3 (559-592)||(25204150-25204183)
chr3 (364-437)||(44352747-44352820)
[»] chr1 (1 HSPs)
chr1 (559-594)||(47126339-47126374)
[»] chr6 (1 HSPs)
chr6 (560-597)||(2002150-2002187)
[»] chr5 (1 HSPs)
chr5 (558-595)||(35053681-35053718)


Alignment Details
Target: chr4 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 19 - 713
Target Start/End: Complemental strand, 22016642 - 22015949
Alignment:
Q  19 tcttatgtctggttccattcattatcctcgtagcactcctcaggttccttgtcnnnnnnnnnnnnnnnnnnnnnnatacacccgtgtagcacgtagcact 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||||||    
T  22016642 tcttatgtctggttccattcattatcctcgtagcactcctcaggttccttgtcttttctctctgtttttttttttatacacccgtgtagcacgtagcact 22016543  T
Q  119 aacacttcagattgaaaatgtgtcttgtgtttaacatttgtcggtgttatataccattatgacactgatatatgggattacatttaatgacatttattta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22016542 aacacttcagattgaaaatgtgtcttgtgtttaacatttgtcggtgttatataccattatgacactgatatatgggattacatttaatgacatttattt- 22016444  T
Q  219 ttttttcttctaactattattacaatgtttacgtgtcagtgttgtgtttgatgtatgtgtttgtgtcggtgcttcatagatatacagtactttttcaatt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22016443 ttttttcttctaactattattacaatgtttacgtgtcagtgttgtgtttgatgtatgtgtttgtgtctgtgcttcatagatatacagtactttttcaatt 22016344  T
Q  319 tgtgtttgatgtttgaacttataacaatggtatattttgttattgtagatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016343 tgtgtttgatgtttgaacttataacaatggtatattttgttattgtagatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattg 22016244  T
Q  419 agacttatgttttctggaacctgcacgaaccggttcgaggccaggttctgttcttttccatcttcatattgttcttctgttttcccttttctatttctta 518  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016243 agacttatgttttctggaacctgcacgagccggttcgaggccaggttctgttcttttccatcttcatattgttcttctgttttcccttttctatttctta 22016144  T
Q  519 cattgcattgtgtgagtgttcaaacataaaagcttagaagactatgtagcaccgacactttagattgaaggtgtgtccatgtctgcatccgtgcttcata 618  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016143 cattgcattgtgtgagtgttcaaacataaaagcttaaaagactatgtagcaccgacactttagattgaaggtgtgtccatgtctgcatccgtgcttcata 22016044  T
Q  619 gatagaagatcatttagatatttatcagatagtgtattttcagaactttttctattgaaagacattaaataaatgattgattacatattttggct 713  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016043 gatagaagatcatttagatatttatcagatagtgtattttcagaactttttctattgaaagacattaaataaatgattgattacatattttggct 22015949  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 364 - 467
Target Start/End: Original strand, 40059108 - 40059211
Alignment:
Q  364 tagatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattgagacttatgttttctggaacctgcacgaaccggttcgaggccagg 463  Q
    ||||||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||| || ||||||||||||||| | || ||||| |||  ||||||||    
T  40059108 tagatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 40059207  T
Q  464 ttct 467  Q
    ||||    
T  40059208 ttct 40059211  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 364 - 467
Target Start/End: Original strand, 40077136 - 40077239
Alignment:
Q  364 tagatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattgagacttatgttttctggaacctgcacgaaccggttcgaggccagg 463  Q
    ||||||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||| || ||||||||||||||| | || ||||| |||  ||||||||    
T  40077136 tagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 40077235  T
Q  464 ttct 467  Q
    ||||    
T  40077236 ttct 40077239  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 364 - 467
Target Start/End: Original strand, 40085046 - 40085149
Alignment:
Q  364 tagatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattgagacttatgttttctggaacctgcacgaaccggttcgaggccagg 463  Q
    ||||||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||| || ||||||||||||||| | || ||||| |||  ||||||||    
T  40085046 tagatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 40085145  T
Q  464 ttct 467  Q
    ||||    
T  40085146 ttct 40085149  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 5453709 - 5453660
Alignment:
Q  248 tacgtgtcagtgttgtgtttgatgtatgtgtttgtgtcggtgcttcatag 297  Q
    ||||||| ||||||||||||| ||| ||||| |||||| |||||||||||    
T  5453709 tacgtgttagtgttgtgtttggtgtttgtgtatgtgtcagtgcttcatag 5453660  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 251 - 298
Target Start/End: Original strand, 16657507 - 16657554
Alignment:
Q  251 gtgtcagtgttgtgtttgatgtatgtgtttgtgtcggtgcttcataga 298  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  16657507 gtgtcattgtcgtgtttgatgtctgtgtttgtgtcggtgcttcataga 16657554  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 595
Target Start/End: Complemental strand, 34489330 - 34489298
Alignment:
Q  563 tgtagcaccgacactttagattgaaggtgtgtc 595  Q
    |||||||||||||||||||||||||||||||||    
T  34489330 tgtagcaccgacactttagattgaaggtgtgtc 34489298  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 40097577 - 40097614
Alignment:
Q  26 tctggttccattcattatcctcgtagcactcctcaggt 63  Q
    |||||||| |||||||||||||||||||||||||||||    
T  40097577 tctggttcaattcattatcctcgtagcactcctcaggt 40097614  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 592
Target Start/End: Original strand, 25204150 - 25204183
Alignment:
Q  559 actatgtagcaccgacactttagattgaaggtgt 592  Q
    ||||||||||||||||||||||||||||| ||||    
T  25204150 actatgtagcaccgacactttagattgaatgtgt 25204183  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 437
Target Start/End: Complemental strand, 44352820 - 44352747
Alignment:
Q  364 tagatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattgagacttatgttttctggaa 437  Q
    |||||||||||||  |||||||| | | ||||||| || ||||| ||||| ||||| || ||||||||||||||    
T  44352820 tagatgtggcctgctcttattcaaacagcaaaagaaggtggaatagatgtcattgaaacctatgttttctggaa 44352747  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 594
Target Start/End: Complemental strand, 47126374 - 47126339
Alignment:
Q  559 actatgtagcaccgacactttagattgaaggtgtgt 594  Q
    |||||||| |||||||||||||||||||||||||||    
T  47126374 actatgtatcaccgacactttagattgaaggtgtgt 47126339  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 597
Target Start/End: Original strand, 2002150 - 2002187
Alignment:
Q  560 ctatgtagcaccgacactttagattgaaggtgtgtcca 597  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  2002150 ctatgtagcaccgacacattagattgaaggtttgtcca 2002187  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 595
Target Start/End: Original strand, 35053681 - 35053718
Alignment:
Q  558 gactatgtagcaccgacactttagattgaaggtgtgtc 595  Q
    |||||||||||||||||||||  |||||||||||||||    
T  35053681 gactatgtagcaccgacacttctgattgaaggtgtgtc 35053718  T

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