View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_30 (Length: 301)
Name: NF7719_low_30
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 45541711 - 45541438
Alignment:
| Q |
7 |
tttggaggtgcgtctgtgtttgacttttgtgtctgatcaacttcttctgttttttcattttgctctgatttcatatttgctgtgttattctctccaatac |
106 |
Q |
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| T |
45541711 |
tttggaggtgcgtctgtgtttgacttttgtgtctgatcaacttcttctgttttttcattttgctctgatttcatatttggtgtgttattctctccaacac |
45541612 |
T |
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| Q |
107 |
ccttggatgagacacttttatctccatctttcgatcttcaaaataatgaacacaa--aaaataattaaatagtttactcaatggcaactcaactaagcat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||||||||||||||| |
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| T |
45541611 |
ccttggatgagacacttttatctccatctttcgatcttcaaaataatgaacacaaaaaaaaaaattaaatagtttgcccaatggcaactcaactaagcat |
45541512 |
T |
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| Q |
205 |
atcatgcaattataattaatacatacaaaaaggtggtaagtgattgaagcttacgttttaaaagcgtaggatcctgtg |
282 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45541511 |
atcatgcaatt----gtaatacatacaaaaaggtggtaagtgattgaagcttacgttttaaaagcgtaggatcctgtg |
45541438 |
T |
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