View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7719_low_31 (Length: 293)

Name: NF7719_low_31
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7719_low_31
NF7719_low_31
[»] chr6 (7 HSPs)
chr6 (18-282)||(34635995-34636259)
chr6 (211-282)||(23260756-23260827)
chr6 (211-282)||(25005145-25005216)
chr6 (211-282)||(32450441-32450511)
chr6 (211-282)||(26182629-26182700)
chr6 (211-279)||(11166593-11166661)
chr6 (211-262)||(10751623-10751674)
[»] chr5 (4 HSPs)
chr5 (18-282)||(536538-536802)
chr5 (52-147)||(42860997-42861095)
chr5 (211-261)||(27026622-27026672)
chr5 (211-282)||(4558151-4558221)
[»] chr7 (12 HSPs)
chr7 (18-282)||(15874115-15874379)
chr7 (113-217)||(45232879-45232984)
chr7 (211-282)||(22077634-22077705)
chr7 (211-282)||(48576333-48576404)
chr7 (211-282)||(18367504-18367575)
chr7 (219-282)||(21491676-21491739)
chr7 (211-267)||(48654421-48654477)
chr7 (197-251)||(9993278-9993332)
chr7 (211-261)||(12196765-12196815)
chr7 (213-251)||(11036685-11036723)
chr7 (211-252)||(10289388-10289429)
chr7 (211-247)||(7503910-7503946)
[»] chr1 (9 HSPs)
chr1 (52-251)||(6835794-6835993)
chr1 (211-282)||(35762230-35762301)
chr1 (217-282)||(37667328-37667393)
chr1 (212-282)||(9537532-9537602)
chr1 (211-251)||(21264799-21264839)
chr1 (20-53)||(6835690-6835723)
chr1 (211-279)||(16074711-16074782)
chr1 (211-252)||(43407964-43408005)
chr1 (211-251)||(8421575-8421615)
[»] chr3 (6 HSPs)
chr3 (211-282)||(5004898-5004969)
chr3 (211-282)||(46404740-46404812)
chr3 (211-282)||(16475279-16475350)
chr3 (211-282)||(16975254-16975326)
chr3 (193-263)||(11968077-11968146)
chr3 (211-252)||(7337291-7337332)
[»] chr2 (3 HSPs)
chr2 (211-282)||(32735470-32735541)
chr2 (211-267)||(12774999-12775055)
chr2 (211-267)||(28267737-28267792)
[»] scaffold0413 (1 HSPs)
scaffold0413 (211-282)||(8841-8912)
[»] chr4 (1 HSPs)
chr4 (211-282)||(28969359-28969430)
[»] scaffold0120 (1 HSPs)
scaffold0120 (211-282)||(2648-2719)
[»] scaffold0002 (1 HSPs)
scaffold0002 (194-252)||(356917-356975)
[»] chr8 (1 HSPs)
chr8 (211-245)||(22816554-22816588)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 34635995 - 34636259
Alignment:
Q  18 cttggaaccacctcatctttgtacatagtctttcagagctggtcttgtctcaaagtactattaccaggtttcattccaagtctcccactctagttcaact 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34635995 cttggaaccacctcatctttgtacatagtctttcagagctggtcttgtctcaaagtactattaccaggtttcattccaagtctcccactctagtccaact 34636094  T
Q  118 cgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttcaatacaaccttaggaatgtcttgtgaggaagaaaagtgtctcgggtaagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636095 cgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttcaatacaaccttaggaatgtcttgtgaggaagaaaagtgtctcgggtaagg 34636194  T
Q  218 gctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34636195 gctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattctt 34636259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 23260827 - 23260756
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  23260827 ggtaagggctttttccccatacgttcttactaagtattaggattatgttatgaattagaggtagagattctt 23260756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 25005145 - 25005216
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  25005145 ggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattctt 25005216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 32450511 - 32450441
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    ||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  32450511 ggtaagggctttt-ccccgtacgttcttactaagtactaggattgtgttatgaattagaggtagagattctt 32450441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 26182700 - 26182629
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    ||||||||||||||||||||| || | ||||||||| |||||| ||||||||||||| || |||||||||||    
T  26182700 ggtaagggctttttccccatatgtccatactaagtattaggatgatgttatgaattagagttagagattctt 26182629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 11166661 - 11166593
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagatt 279  Q
    |||||||||||||||||||||||||||||||||||  ||||||  | ||||||| ||  ||||||||||    
T  11166661 ggtaagggctttttccccatacgttcttactaagtgttaggatcttattatgaaatagtggtagagatt 11166593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 10751674 - 10751623
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatg 262  Q
    ||||||||| |||||||||||| |||||||||||||||| ||| ||||||||    
T  10751674 ggtaagggccttttccccatacattcttactaagtactatgataatgttatg 10751623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 536538 - 536802
Alignment:
Q  18 cttggaaccacctcatctttgtacatagtctttcagagctggtcttgtctcaaagtactattaccaggtttcattccaagtctcccactctagttcaact 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  536538 cttggaaccacctcatctttgtacatagtctttcagagctggtcttgtctcaaagtactattaccaggtttcattccaagtctcccactctagtccaact 536637  T
Q  118 cgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttcaatacaaccttaggaatgtcttgtgaggaagaaaagtgtctcgggtaagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536638 cgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttcaatacaaccttaggaatgtcttgtgaggaagaaaagtgtctcgggtaagg 536737  T
Q  218 gctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  536738 gctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattctt 536802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 42860997 - 42861095
Alignment:
Q  52 agagctggtcttgtctcaaagtactattaccaggtttcattccaagtctccca--ctctagttcaactcgttttattggtgag-tttggggtcaagaaa 147  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||  |||| || |||||||||||||||||||| || ||||||||||||    
T  42860997 agagctggccttgtctcaaagtactattaccaggtttcattctaagtctcccactctcttgtccaactcgttttattggtgagattgggggtcaagaaa 42861095  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 27026622 - 27026672
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttat 261  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  27026622 ggtaagggctttttccccatacgtttttactaagtgctaggattgtgttat 27026672  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 4558221 - 4558151
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    ||||||||||||||||| ||||||   ||||||||| |||||| ||||||||| ||| ||||||||||||||    
T  4558221 ggtaagggctttttccc-atacgtctatactaagtattaggatgatgttatgatttagaggtagagattctt 4558151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 15874379 - 15874115
Alignment:
Q  18 cttggaaccacctcatctttgtacatagtctttcagagctggtcttgtctcaaagtactattaccaggtttcattccaagtctcccactctagttcaact 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15874379 cttggaaccacctcatctttgtacatagtctttcagagttggtcttgtctcaaagtactattaccaggtttcattccaagtctcccactctagtccaact 15874280  T
Q  118 cgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttcaatacaaccttaggaatgtcttgtgaggaagaaaagtgtctcgggtaagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15874279 cgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttcaatacaaccttaggaatgtcttgtgaggaagaaaagtgtctcgggtaagg 15874180  T
Q  218 gctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15874179 gctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattctt 15874115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 45232879 - 45232984
Alignment:
Q  113 caactcgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttca-atacaaccttaggaatgtcttgtgaggaagaaaagtgtctcgg 211  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||||||||| || | |||| |||||||||||||||||||||||||||  ||||| |    
T  45232879 caacttgttttattggtgagattggggtctagaaacttgctcgtgctttcggtgcagacacaatcttaggaatgtcttgtgaggaagaaaaacgtctcag 45232978  T
Q  212 gtaagg 217  Q
    ||||||    
T  45232979 gtaagg 45232984  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 22077634 - 22077705
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||    
T  22077634 ggtaagggcttttttcccatatgttcatactaagtactaggatgatgttatgaattagaggtagagattctt 22077705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 48576333 - 48576404
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||| ||||||||||||||    
T  48576333 ggtaagggctttttccccatacgtccatactaagtactgggataatgttatgaattagaggtagagattctt 48576404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 18367575 - 18367504
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    ||||||||||||||||| |||||| | || |||| |||||||  ||||||||||||||||||||||||||||    
T  18367575 ggtaagggctttttccctatacgtccataataagaactaggacgatgttatgaattaaaggtagagattctt 18367504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 21491739 - 21491676
Alignment:
Q  219 ctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||| ||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||    
T  21491739 cttttttcccatacgtccatactaagtactaggatgatgttatgaattagaggtagagattctt 21491676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 48654477 - 48654421
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaatta 267  Q
    |||||||| ||||||||||||||| | |||||||||||||||| ||||| |||||||    
T  48654477 ggtaagggttttttccccatacgtccatactaagtactaggatgatgttgtgaatta 48654421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 9993278 - 9993332
Alignment:
Q  197 agaaaagtgtctcgggtaagggctttttccccatacgttcttactaagtactagg 251  Q
    ||||||| ||||  ||||||||||||||||||| ||||||||||||||| |||||    
T  9993278 agaaaagggtctaaggtaagggctttttccccacacgttcttactaagtgctagg 9993332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 12196815 - 12196765
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttat 261  Q
    |||||||||||||||||||||| |||||||||||| | |||| ||||||||    
T  12196815 ggtaagggctttttccccatacattcttactaagtgcaaggactatgttat 12196765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 11036723 - 11036685
Alignment:
Q  213 taagggctttttccccatacgttcttactaagtactagg 251  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  11036723 taagggctttttccccacacgttcttactaagtgctagg 11036685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 10289429 - 10289388
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactagga 252  Q
    |||||||||||||||||||||||| | |||||||| ||||||    
T  10289429 ggtaagggctttttccccatacgtccatactaagtgctagga 10289388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 7503910 - 7503946
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtac 247  Q
    |||||||||||||||||||||||| | ||||||||||    
T  7503910 ggtaagggctttttccccatacgtccatactaagtac 7503946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 52 - 251
Target Start/End: Original strand, 6835794 - 6835993
Alignment:
Q  52 agagctggtcttgtctcaaagtactattaccaggtttcattccaagtctcccactctagttcaactcgttttattggtgagtttggggtcaagaaacttg 151  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  6835794 agagctggccttgtctcaaagtactattaccaggtttcattctaagtctcccactctagtccaactcgttttattggtgagattggggtcaagaaacttg 6835893  T
Q  152 ctcgtgctttcggttcaatacaaccttaggaatgtcttgtgaggaagaaaagtgtctcgggtaagggctttttccccatacgttcttactaagtactagg 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6835894 ctcgtgctttcggttcaatacaaccttaggaatgtcttgtgaggaagaaaagtgtctcgggtaagggctttttccccatacgttcttactaagtgctagg 6835993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 35762301 - 35762230
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||    
T  35762301 ggtaagggctttttccccatacgtccatactaagtactaggattatgttatgaattagaggtagagattctt 35762230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 37667393 - 37667328
Alignment:
Q  217 ggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  37667393 ggctttttccccatacgttcttactaagtaataggattatgttatgaattagaggtagagattctt 37667328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 282
Target Start/End: Complemental strand, 9537602 - 9537532
Alignment:
Q  212 gtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||||||||| || ||||||| | |||| ||||||||||| ||||||||||||| ||||| ||||||||    
T  9537602 gtaagggcttttacctcatacgtccatactgagtactaggatgatgttatgaattagaggtatagattctt 9537532  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 21264839 - 21264799
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactagg 251  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  21264839 ggtaagggctttttccccatacgttcttactaagtgctagg 21264799  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 6835690 - 6835723
Alignment:
Q  20 tggaaccacctcatctttgtacatagtctttcag 53  Q
    ||||||||||||||||||||||||||||||||||    
T  6835690 tggaaccacctcatctttgtacatagtctttcag 6835723  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 16074711 - 16074782
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatg---ttatgaattaaaggtagagatt 279  Q
    |||||||||||||| ||||||||||| ||||||||||| |||| |||   |||||||||| || ||||||||    
T  16074711 ggtaagggcttttttcccatacgttcatactaagtactgggatgatgatattatgaattagagatagagatt 16074782  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 43408005 - 43407964
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactagga 252  Q
    |||||||||||||||||||||||| | |||||||| ||||||    
T  43408005 ggtaagggctttttccccatacgtccatactaagtgctagga 43407964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 8421575 - 8421615
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactagg 251  Q
    |||||||||||||||||||||||| | |||||||| |||||    
T  8421575 ggtaagggctttttccccatacgtacatactaagtgctagg 8421615  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 5004969 - 5004898
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5004969 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattctt 5004898  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 46404812 - 46404740
Alignment:
Q  211 ggtaagggcttttt-ccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46404812 ggtaagggcttttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattctt 46404740  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 16475279 - 16475350
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  16475279 ggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattctt 16475350  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 16975254 - 16975326
Alignment:
Q  211 ggtaagggctttttcccc-atacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    ||||||||||||| |||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  16975254 ggtaagggcttttccccccatacattcttaataagtactaggattatgttatgaattagaggtagagattctt 16975326  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 11968146 - 11968077
Alignment:
Q  193 aggaagaaaagtgtctcg-ggtaagggctttttccccatacgttcttactaagtactaggattatgttatga 263  Q
    |||||||||||| ||||| |||||||| |||||||| |||||| | |||||||||||||||| |||||||||    
T  11968146 aggaagaaaagt-tctcgaggtaagggttttttccc-atacgtccatactaagtactaggatgatgttatga 11968077  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 7337332 - 7337291
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactagga 252  Q
    |||||||||||||||||||||||| | |||||||| ||||||    
T  7337332 ggtaagggctttttccccatacgtccatactaagtgctagga 7337291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 32735541 - 32735470
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  32735541 ggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaattagaggtagagattctt 32735470  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 12775055 - 12774999
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaatta 267  Q
    |||||||||||||||||||||||| | ||| |||||||||||| ||||| |||||||    
T  12775055 ggtaagggctttttccccatacgtccatacaaagtactaggatgatgttgtgaatta 12774999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 28267792 - 28267737
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaatta 267  Q
    |||||||| |||||||| |||||| | |||||||||||||||| ||||| |||||||    
T  28267792 ggtaagggttttttccc-atacgtccatactaagtactaggatgatgttgtgaatta 28267737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 8841 - 8912
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||    
T  8841 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtataaattctt 8912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 28969430 - 28969359
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    |||||||| ||||||| ||||||| | |||||||||||||||| ||||||||||||| ||||||| ||||||    
T  28969430 ggtaagggttttttcctcatacgtccatactaagtactaggatgatgttatgaattagaggtagaaattctt 28969359  T

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Target: scaffold0120 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 2719 - 2648
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattctt 282  Q
    ||||||||||||||||||||||||||||||||||| |||||| | |||||| || ||  |||||| ||||||    
T  2719 ggtaagggctttttccccatacgttcttactaagtgctaggactttgttataaaatagtggtagaaattctt 2648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 356975 - 356917
Alignment:
Q  194 ggaagaaaagtgtctcgggtaagggctttttccccatacgttcttactaagtactagga 252  Q
    ||||| |||| ||||  |||||||  |||||||||||||||||||||||||| ||||||    
T  356975 ggaagtaaagcgtctaaggtaaggattttttccccatacgttcttactaagtgctagga 356917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 22816588 - 22816554
Alignment:
Q  211 ggtaagggctttttccccatacgttcttactaagt 245  Q
    |||||||||||||||||||||||||||| ||||||    
T  22816588 ggtaagggctttttccccatacgttcttgctaagt 22816554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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