View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7719_low_32 (Length: 287)

Name: NF7719_low_32
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7719_low_32
NF7719_low_32
[»] scaffold0148 (1 HSPs)
scaffold0148 (12-287)||(27887-28176)


Alignment Details
Target: scaffold0148 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 27887 - 28176
Alignment:
Q  12 tggttatcattgtagaatcctggtaaacatttgcaaacgctatcatcgtcattacagctagcaaagtttccacaagcattatatgttaaacatttgcttc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27887 tggttatcattgtagaatcctggtaaacatttgcaaacgctatcatcgtcattacagctagcaaagtttccacaagcattatatgttaaacatttgcttc 27986  T
Q  112 ttggctgcttccatataactggcaaatcatcttccacccactgtatcacacctgtggaattgaggaacaatcttttattgttatactgtttgttacgaat 211  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27987 ttggctgcttccatataactagcaaatcatcttccacccactgtatcacacctgtggaattgaggaacaatcttttattgttatactgttcgttacgaat 28086  T
Q  212 tactgacctgttccgtttttcaggtgaactgaatttgtt--------------caagaaaactgaagttggtcaacaaattataaacctc 287  Q
    |||||| ||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||    
T  28087 tactgatctgttccgtttttcaggtgaactgaatttgtttgacgaattataaacaagaaaactgaagttggtcaacaaattataaacctc 28176  T

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