View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7719_low_33 (Length: 286)

Name: NF7719_low_33
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7719_low_33
NF7719_low_33
[»] chr4 (25 HSPs)
chr4 (91-226)||(23088270-23088405)
chr4 (94-226)||(23089209-23089341)
chr4 (96-192)||(31914522-31914618)
chr4 (91-165)||(31135164-31135238)
chr4 (94-190)||(12210893-12210989)
chr4 (94-165)||(31135898-31135969)
chr4 (91-165)||(20627521-20627595)
chr4 (93-165)||(12206760-12206832)
chr4 (105-223)||(54501584-54501702)
chr4 (97-165)||(31689177-31689245)
chr4 (91-223)||(34837913-34838045)
chr4 (96-164)||(41164169-41164237)
chr4 (94-223)||(34836747-34836876)
chr4 (93-191)||(11791357-11791455)
chr4 (97-176)||(48314367-48314446)
chr4 (105-223)||(34978352-34978470)
chr4 (91-143)||(31908375-31908427)
chr4 (95-164)||(12921863-12921932)
chr4 (109-190)||(42523214-42523295)
chr4 (92-157)||(48315193-48315258)
chr4 (100-223)||(11792260-11792383)
chr4 (105-166)||(20628337-20628398)
chr4 (105-190)||(42523861-42523945)
chr4 (94-164)||(12921126-12921196)
chr4 (95-174)||(12584137-12584216)
[»] chr7 (12 HSPs)
chr7 (88-226)||(41970879-41971017)
chr7 (91-226)||(5995247-5995382)
chr7 (93-226)||(5997552-5997683)
chr7 (93-182)||(45550994-45551083)
chr7 (95-166)||(45551804-45551875)
chr7 (96-223)||(27258051-27258177)
chr7 (96-165)||(27268242-27268311)
chr7 (91-155)||(28778109-28778173)
chr7 (93-143)||(38887327-38887377)
chr7 (101-199)||(1409380-1409476)
chr7 (95-142)||(47552522-47552569)
chr7 (93-190)||(43744560-43744656)
[»] chr3 (20 HSPs)
chr3 (97-226)||(51341874-51342002)
chr3 (91-159)||(27359841-27359909)
chr3 (94-165)||(4300930-4301001)
chr3 (93-190)||(54285790-54285887)
chr3 (92-164)||(40929858-40929930)
chr3 (99-165)||(17619144-17619210)
chr3 (91-160)||(28422850-28422919)
chr3 (94-190)||(29032780-29032875)
chr3 (91-166)||(27317474-27317549)
chr3 (134-224)||(51342645-51342735)
chr3 (88-190)||(27473848-27473951)
chr3 (94-190)||(33147329-33147425)
chr3 (97-164)||(2841207-2841274)
chr3 (91-190)||(33148274-33148373)
chr3 (110-165)||(17615035-17615090)
chr3 (135-190)||(1602477-1602532)
chr3 (94-166)||(2840201-2840272)
chr3 (90-143)||(27474902-27474955)
chr3 (95-139)||(8652108-8652152)
chr3 (91-143)||(39644534-39644586)
[»] chr6 (14 HSPs)
chr6 (88-190)||(17279875-17279977)
chr6 (94-191)||(19237577-19237674)
chr6 (97-190)||(17280674-17280767)
chr6 (95-223)||(29374985-29375113)
chr6 (91-165)||(10792477-10792551)
chr6 (91-166)||(5860544-5860619)
chr6 (97-155)||(8683866-8683924)
chr6 (91-223)||(8238063-8238195)
chr6 (93-165)||(10793579-10793651)
chr6 (91-223)||(7001715-7001847)
chr6 (94-164)||(25359496-25359566)
chr6 (91-143)||(28523378-28523430)
chr6 (127-223)||(8238812-8238908)
chr6 (91-143)||(12441728-12441780)
[»] chr5 (4 HSPs)
chr5 (91-165)||(33471159-33471233)
chr5 (93-226)||(22671603-22671735)
chr5 (97-164)||(33471854-33471921)
chr5 (94-143)||(30667861-30667910)
[»] chr1 (12 HSPs)
chr1 (93-223)||(16801969-16802099)
chr1 (18-92)||(33980591-33980665)
chr1 (91-223)||(16802624-16802756)
chr1 (91-165)||(42026890-42026964)
chr1 (93-165)||(42031693-42031765)
chr1 (91-191)||(17239380-17239480)
chr1 (93-165)||(34269084-34269156)
chr1 (93-165)||(34275319-34275391)
chr1 (91-165)||(34267970-34268044)
chr1 (97-212)||(24790803-24790918)
chr1 (93-183)||(17238593-17238683)
chr1 (97-169)||(34361210-34361282)
[»] chr8 (19 HSPs)
chr8 (76-165)||(30972006-30972095)
chr8 (94-190)||(16105999-16106095)
chr8 (94-190)||(16113239-16113335)
chr8 (93-190)||(16101519-16101616)
chr8 (93-226)||(32744006-32744139)
chr8 (97-165)||(30971285-30971353)
chr8 (97-192)||(1636848-1636943)
chr8 (91-189)||(23220002-23220100)
chr8 (91-143)||(1274129-1274181)
chr8 (95-191)||(5152427-5152523)
chr8 (93-143)||(42757602-42757652)
chr8 (95-223)||(28965773-28965901)
chr8 (91-143)||(18573508-18573560)
chr8 (95-143)||(12836696-12836744)
chr8 (97-189)||(23220854-23220946)
chr8 (91-142)||(3743124-3743175)
chr8 (97-155)||(18575852-18575910)
chr8 (97-147)||(28966536-28966586)
chr8 (96-169)||(15869720-15869793)
[»] chr2 (11 HSPs)
chr2 (96-165)||(16591526-16591595)
chr2 (95-165)||(18767569-18767639)
chr2 (93-221)||(45631083-45631211)
chr2 (91-175)||(5483904-5483988)
chr2 (104-166)||(9244251-9244313)
chr2 (91-143)||(39240876-39240928)
chr2 (91-164)||(9243988-9244061)
chr2 (105-165)||(29558160-29558219)
chr2 (92-143)||(32667406-32667457)
chr2 (91-190)||(18236651-18236751)
chr2 (134-190)||(32568162-32568217)
[»] scaffold0015 (1 HSPs)
scaffold0015 (94-160)||(45330-45396)
[»] scaffold0112 (3 HSPs)
scaffold0112 (91-176)||(24722-24807)
scaffold0112 (97-142)||(35003-35048)
scaffold0112 (93-142)||(35816-35865)
[»] scaffold0676 (1 HSPs)
scaffold0676 (103-143)||(3168-3208)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 91 - 226
Target Start/End: Original strand, 23088270 - 23088405
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||||||    
T  23088270 atggggtttgctacaatagacccactcattttcatgaaggtctattttagcaaccaacaccttctcacttcgacaagaatacccttatttttgttttttg 23088369  T
Q  191 gaccaatcataactaaaggacaaaaatgtaattagc 226  Q
    ||||||||| ||||||||||||||||||||||||||    
T  23088370 gaccaatcaaaactaaaggacaaaaatgtaattagc 23088405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 23089341 - 23089209
Alignment:
Q  94 gggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttggac 193  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  23089341 gggtttgctacaatagacccactcattttcatgtaggtctattttagcaaccaacaccttttcacttggacaagaatacccttatttttgttttttggac 23089242  T
Q  194 caatcataactaaaggacaaaaatgtaattagc 226  Q
    |||||| |||||||||| | |||||||||||||    
T  23089241 caatcaaaactaaaggatacaaatgtaattagc 23089209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 31914522 - 31914618
Alignment:
Q  96 gtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttgga 192  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||  || |||| |||||||| ||||||||    
T  31914522 gtttgctacaatagacccactcattttcatgaagatctattttagcaaccagcaccttttcacttggacacaaagacccttatttttgttttttgga 31914618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 31135164 - 31135238
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31135164 atggagtttgctacaatagaccaactcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 31135238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 12210989 - 12210893
Alignment:
Q  94 gggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||  ||||||||||||||||||  ||| |||| ||||||| ||||||    
T  12210989 gggtttgctacaatagaccaactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaatgcccacatttttgttttttg 12210893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 31135969 - 31135898
Alignment:
Q  94 gggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  31135969 gggtttgctacaatagatccattcaatttcatgaaggtgtattttagcaaccaacaccttttcacttggaca 31135898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 20627521 - 20627595
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  20627521 atggagtttgctacaatagacccactcattttcatgaaagtctattttagcacccaacaccttttcacttggaca 20627595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 12206760 - 12206832
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  12206760 ggggtttgctacaatagacccactcatttttatgaaggtctattttagcaacctgcaccttttcacttggaca 12206832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 54501702 - 54501584
Alignment:
Q  105 aatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttggaccaatcataact 204  Q
    ||||||| || ||||||| ||||||||||| ||||||||||||||| |||| |||||||||| || || ||| |||||| ||||||||||||| | ||      
T  54501702 aatagactcactcatttttatgaaggtctaatttagcaaccaacacatttttacttggacaaaaagactcatgtttttgttttttggaccaattaaaatc 54501603  T
Q  205 aaaggacaaaaatgtaatt 223  Q
    |||||||| ||||||||||    
T  54501602 aaaggacacaaatgtaatt 54501584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 31689177 - 31689245
Alignment:
Q  97 tttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||||    
T  31689177 tttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcactcggaca 31689245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 34838045 - 34837913
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    |||||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||| |||||| |||||||  || || | |||||||| |||||     
T  34838045 atggggtttgctacaatagacccactcatttttatgaagttttattttagcaaccaacactttttcaattggacacaaaaacacttatttttgttttttt 34837946  T
Q  191 gaccaatcataactaaaggacaaaaatgtaatt 223  Q
      | ||| | ||||||||| || ||||||||||    
T  34837945 agcaaattaaaactaaagggcacaaatgtaatt 34837913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 41164237 - 41164169
Alignment:
Q  96 gtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggac 164  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  41164237 gtttgctacagtagacccattcatttttatgaaagtctattttagcaaccaacacattttcacttggac 41164169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 34836747 - 34836876
Alignment:
Q  94 gggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttggac 193  Q
    |||||| |||||||||||||| | ||||| |||||||||||||||| ||||||||| ||||||| ||||||   || |||| |||||||| ||||||  |    
T  34836747 gggttttctacaatagacccacttatttttatgaaggtctattttatcaaccaacatcttttcaattggacccaaaaacccttatttttgttttttgagc 34836846  T
Q  194 caatcataactaaaggacaaaaatgtaatt 223  Q
     ||| | ||||||||| || ||||||||||    
T  34836847 aaattaaaactaaagggcacaaatgtaatt 34836876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 11791357 - 11791455
Alignment:
Q  93 ggggtttgctacaatagaccca-ttcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttgg 191  Q
    |||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||| |||||||||||||||||  || |||| |||||||  |||||||    
T  11791357 ggggtttgctacaatagacccacttcatttt-atgaatgtctattttagcaagcaataccttttcacttggacacaaagacccctatttttattttttgg 11791455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 48314367 - 48314446
Alignment:
Q  97 tttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccat 176  Q
    |||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| || ||| | |||||||||    
T  48314367 tttgctgcaatagacccactcattttcatgaaagtctattttagcaagcaacaccttttcatttagactaaaatacccat 48314446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 34978352 - 34978470
Alignment:
Q  105 aatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttggaccaatcataact 204  Q
    |||||||||| ||||||| |||||||||||||||| ||||||||||||||||| ||||||   || |||| |||||||| ||||||  | ||| | ||||    
T  34978352 aatagacccactcatttttatgaaggtctattttatcaaccaacaccttttcaattggacctaaaaacccttatttttgttttttgagcaaattaaaact 34978451  T
Q  205 aaaggacaaaaatgtaatt 223  Q
    || || || ||||||||||    
T  34978452 aaggggcacaaatgtaatt 34978470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 31908427 - 31908375
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaa 143  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  31908427 atggggtttgctacaatagacccactcatttttatgaaggtctattttagcaa 31908375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 12921932 - 12921863
Alignment:
Q  95 ggtttgctacaatagaccca-ttcattttcatgaaggtctattttagcaaccaacaccttttcacttggac 164  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||| ||||||    
T  12921932 ggtttgctacaatagacccacttcatttt-atgaaggtctattttagcatccagcaccttttcatttggac 12921863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 42523214 - 42523295
Alignment:
Q  109 gacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    |||||| ||||||| |||||||||| |||||||||  |||||||||||| |||||| | || ||||||||||||| ||||||    
T  42523214 gacccactcatttttatgaaggtctcttttagcaagtaacaccttttcatttggaccaaaagacccatatttttgttttttg 42523295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 48315258 - 48315193
Alignment:
Q  92 tggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttca 157  Q
    |||| |||||||||||||||||| | |||||||| ||||| ||||||||||| |||||||||||||    
T  48315258 tgggatttgctacaatagacccacttattttcataaaggtttattttagcaagcaacaccttttca 48315193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 223
Target Start/End: Complemental strand, 11792383 - 11792260
Alignment:
Q  100 gctacaatagaccca-ttcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttggaccaatc 198  Q
    |||||||||||| || |||| ||| |||||||||||||||||||| | |||||||| ||||||||||  || |||| |||||||| |||||||   |||     
T  11792383 gctacaatagacgcacttcagttt-atgaaggtctattttagcaagctacacctttacacttggacacaaaaacccttatttttgttttttgggtaaatt 11792285  T
Q  199 ataactaaaggacaaaaatgtaatt 223  Q
    | | |||||||||| ||||||||||    
T  11792284 aaatctaaaggacacaaatgtaatt 11792260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 20628398 - 20628337
Alignment:
Q  105 aatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaa 166  Q
    ||||||||||  |||||| |||||||||||||||| ||| ||||||||||||||| ||||||    
T  20628398 aatagacccacccatttttatgaaggtctattttaccaagcaacaccttttcactaggacaa 20628337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 42523945 - 42523861
Alignment:
Q  105 aatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    ||||||| || ||||||||||||| |||| |||||||||  ||||||||||||||||||| | |||  ||||||||||| ||||||    
T  42523945 aatagactcactcattttcatgaaagtctgttttagcaagtaacaccttttcacttggacca-aatgaccatatttttgttttttg 42523861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 12921126 - 12921196
Alignment:
Q  94 gggtttgctacaatagaccca-ttcattttcatgaaggtctattttagcaaccaacaccttttcacttggac 164  Q
    |||||||||||||||||| || |||||||| |||||||| |||||||||| ||| |||||||||| ||||||    
T  12921126 gggtttgctacaatagacgcacttcatttt-atgaaggtttattttagcatccagcaccttttcatttggac 12921196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 12584216 - 12584137
Alignment:
Q  95 ggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaataccc 174  Q
    ||||||||||||||||||  ||  ||||  ||||||||||||||||||| ||| ||||||| | |||||| | |||||||    
T  12584216 ggtttgctacaatagacctttttttttttgtgaaggtctattttagcaatcaataccttttgagttggactaaaataccc 12584137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 88 - 226
Target Start/End: Original strand, 41970879 - 41971017
Alignment:
Q  88 ttaatggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgcttt 187  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| |||    
T  41970879 ttaatggggtttgctacaatagacccactcattttcatgaagatctattttagcaaccaacaccttttcacttggacaagaatacccttgtttttgtttt 41970978  T
Q  188 ttggaccaatcataactaaaggacaaaaatgtaattagc 226  Q
    || ||||||||| |||||||||| | |||||||||||||    
T  41970979 ttagaccaatcaaaactaaaggatacaaatgtaattagc 41971017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 91 - 226
Target Start/End: Original strand, 5995247 - 5995382
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||  ||| ||||  |||||| ||||||    
T  5995247 atggggtttgctacaatagacccactcattttcatgaaggtctattttagcaaccaacaccttttcatttggacacaaatgcccaagtttttgttttttg 5995346  T
Q  191 gaccaatcataactaaaggacaaaaatgtaattagc 226  Q
    ||||||||| |||| |||||||| || |||||||||    
T  5995347 gaccaatcaaaactgaaggacaagaaggtaattagc 5995382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 93 - 226
Target Start/End: Complemental strand, 5997683 - 5997552
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttgga 192  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||| |||||||  || ||||    
T  5997683 ggggtttgctacaatagacccactcattttcatgaaggtctattttagcaaccagcaccttttcacttggaca--aatgcccaaatttttgtcttctgga 5997586  T
Q  193 ccaatcataactaaaggacaaaaatgtaattagc 226  Q
    ||||||| |||| ||||||||||| |||||||||    
T  5997585 ccaatcaaaactgaaggacaaaaaggtaattagc 5997552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 93 - 182
Target Start/End: Original strand, 45550994 - 45551083
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatattttt 182  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || ||||| || |||| |||||||    
T  45550994 ggggtttgctacaatagacccactcaatttcatgaaggtctattttagcaaccaacaccttttcattttgacaaaaagacccttattttt 45551083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 45551875 - 45551804
Alignment:
Q  95 ggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaa 166  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || |||||    
T  45551875 ggtttgctacaatagacccactcaatttcatgaaggtctattttagcaaccaacaccttttcattttgacaa 45551804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 27258177 - 27258051
Alignment:
Q  96 gtttgctacaatagacccattcattttcatgaagg-tctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttggacc 194  Q
    ||||||| ||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||  || |||| |||||||  ||||| |||     
T  27258177 gtttgctgcaatagatccactcattttcatgaagggtctattttagcaatcaacaccttttcacttggacataaagacccttattttt--ttttttgacg 27258080  T
Q  195 aatcataactaaaggacaaaaatgtaatt 223  Q
    ||| | || ||||||||| ||||||||||    
T  27258079 aattaaaattaaaggacacaaatgtaatt 27258051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 27268311 - 27268242
Alignment:
Q  96 gtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||||| || ||||||||||||||||||    
T  27268311 gtttgatacaatagatccactcattttcatgaaggtctattttagcaatcagcaccttttcacttggaca 27268242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 28778173 - 28778109
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacacctttt 155  Q
    ||||| |||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||    
T  28778173 atgggttttgcttcaatagacccactcattttcatcaaggtctattttagcgaccaacacctttt 28778109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 38887327 - 38887377
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaa 143  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  38887327 ggggtttgctacaatagactcactcattttcatgaaggtctattttagcaa 38887377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 1409380 - 1409476
Alignment:
Q  101 ctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttggaccaatca 199  Q
    |||||||||||||| ||||||| ||||||||||||||||||||    ||||||||| ||||||| | |||| ||  |||||||||||||| || |||||    
T  1409380 ctacaatagacccactcatttttatgaaggtctattttagcaaggtgcaccttttctcttggaccaaaatatcc--atttttgctttttgaacaaatca 1409476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 47552569 - 47552522
Alignment:
Q  95 ggtttgctacaatagacccattcattttcatgaaggtctattttagca 142  Q
    ||||||||||||||||||||  | ||||||||||| ||||||||||||    
T  47552569 ggtttgctacaatagacccaccctttttcatgaagatctattttagca 47552522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 43744560 - 43744656
Alignment:
Q  93 ggggtttgctacaatagaccca-ttcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    |||||||||||||||||||||| ||||||||  ||||| || |||||||||| ||||||| |||   |||||| | |||||||| |||||| |||||||    
T  43744560 ggggtttgctacaatagacccacttcatttt-gtgaagatccattttagcaagcaacacccttttctttggactaaaataccca-atttttcctttttg 43744656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 51341874 - 51342002
Alignment:
Q  97 tttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttggaccaa 196  Q
    |||||||||||||||| | ||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| |||||| ||||| ||||||    
T  51341874 tttgctacaatagacctactcattctcatgaaggtctattttaacaaccaacacctttttacttgaacaagaatacccatgtttttg-ttttttgaccaa 51341972  T
Q  197 tcataactaaaggacaaaaatgtaattagc 226  Q
    | | |||||||||| |||||||||||||||    
T  51341973 taaaaactaaaggaaaaaaatgtaattagc 51342002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 27359909 - 27359841
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcact 159  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  27359909 atggggtttgctacaatagacccactcattttcatgaaggtctattttagcaaacaacaccttttcact 27359841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 4300930 - 4301001
Alignment:
Q  94 gggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||    
T  4300930 gggtttgctacaatagacccacttattttcatgaagatctattttagcaaccaacaccttttcacttggaca 4301001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 54285887 - 54285790
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||  ||| ||||  |||||| ||||||    
T  54285887 ggggtttgctacaatagacccactcatttttatgaaggtctattttagcaacctacaccttttcatttggacacaaatgcccacgtttttgttttttg 54285790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 40929930 - 40929858
Alignment:
Q  92 tggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggac 164  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  40929930 tggggtttgctacaatagacccactcatttttatgaaggtttattttagcaaccaacaccttttcatttggac 40929858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 17619210 - 17619144
Alignment:
Q  99 tgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||    
T  17619210 tgctacaatagacccactcattttcatgaaggtctattttagcaaccagtaccttttcacttggaca 17619144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 28422919 - 28422850
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcactt 160  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| |||||||||||||    
T  28422919 atggggtttgctacaatagacccactcatttttatgaaagtctattttagcaaccatcaccttttcactt 28422850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 29032875 - 29032780
Alignment:
Q  94 gggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||| |||||||||||||  ||| |||| ||||||| ||||||    
T  29032875 gggtttgctacaatagacccattcatttttatgaaggtctattttagcaacctgtacc-tttcacttggacacaaatgcccacatttttgttttttg 29032780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 27317549 - 27317474
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaa 166  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||||||||| | ||||||    
T  27317549 atggggtttgctacaatagacccgctcattttcatgaaggtttattttagcaagcaacaccttttcattaggacaa 27317474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 51342735 - 51342645
Alignment:
Q  134 attttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttggaccaatcataactaaaggacaaaaatgtaatta 224  Q
    |||||| ||| ||||||||||| | |||||||| |||| |||  |||||| ||||||||||||  | ||||||||||||||||||||||||    
T  51342735 attttaacaatcaacacctttttatttggacaaaaatatccacgtttttgttttttggaccaaataaaactaaaggacaaaaatgtaatta 51342645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 27473848 - 27473951
Alignment:
Q  88 ttaatggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca-agaatacccatatttttgctt 186  Q
    |||| |||||||||||||||||||||| ||  |||  |||||||||||||||||||    |||||||||  ||||||| | ||||||||| |||||||||    
T  27473848 ttaaaggggtttgctacaatagacccactctattttgtgaaggtctattttagcaagatgcaccttttcctttggacacaaaatacccatgtttttgctt 27473947  T
Q  187 tttg 190  Q
    ||||    
T  27473948 tttg 27473951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 33147329 - 33147425
Alignment:
Q  94 gggtttgctacaatagacccat-tcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    |||||||||||||||||||||  |||||| ||||||| |||||||||||||    ||||||||||||||||||  |||  ||||||||||| ||||||    
T  33147329 gggtttgctacaatagacccacctcattt-catgaagatctattttagcaagatgcaccttttcacttggacataaatgtccatatttttgttttttg 33147425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 2841274 - 2841207
Alignment:
Q  97 tttgctacaatagaccca-ttcattttcatgaaggtctattttagcaaccaacaccttttcacttggac 164  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||  | |||||||||||| ||||||    
T  2841274 tttgctacaatagacccacttcatttt-atgaaggtctattttagcgccaaacaccttttcatttggac 2841207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 190
Target Start/End: Complemental strand, 33148373 - 33148274
Alignment:
Q  91 atggggtttgctacaatagacccat-tcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgcttttt 189  Q
    |||| ||||||||||||| |||||  ||||||| ||||||||||||||||||||    ||||||||||||||||||  ||| ||||| |||||| |||||    
T  33148373 atggcgtttgctacaataaacccacctcatttt-atgaaggtctattttagcaaggtgcaccttttcacttggacataaatgcccatgtttttgtttttt 33148275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 17615035 - 17615090
Alignment:
Q  110 acccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    ||||| ||||||| |||||||||||||||||||||   ||||||||||||||||||    
T  17615035 acccactcatttttatgaaggtctattttagcaacttgcaccttttcacttggaca 17615090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 1602477 - 1602532
Alignment:
Q  135 ttttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    |||||||||||||||||||||||||| ||||  ||| ||||| |||||| ||||||    
T  1602477 ttttagcaaccaacaccttttcactttgacacaaatgcccatgtttttgttttttg 1602532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 2840201 - 2840272
Alignment:
Q  94 gggtttgctacaatagaccca-ttcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaa 166  Q
    ||||||||||||||||||||| |||||||| || || ||||||||||||| ||| |||||||| | ||||||||    
T  2840201 gggtttgctacaatagacccacttcatttt-at-aaagtctattttagcatccagcacctttttatttggacaa 2840272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 27474955 - 27474902
Alignment:
Q  90 aatggggtttgctacaatagacccattcattttcatgaaggtctattttagcaa 143  Q
    ||||||||||||||||||||||||| ||  |||  |||| ||||||||||||||    
T  27474955 aatggggtttgctacaatagacccactctattttgtgaacgtctattttagcaa 27474902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 8652108 - 8652152
Alignment:
Q  95 ggtttgctacaatagacccattcattttcatgaaggtctatttta 139  Q
    ||||||||||||||||||||    |||||||||||||||||||||    
T  8652108 ggtttgctacaatagacccacctcttttcatgaaggtctatttta 8652152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 39644534 - 39644586
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaa 143  Q
    ||||| ||||||||||||||||||    |||||||||||||| ||||||||||    
T  39644534 atgggttttgctacaatagacccacctcttttcatgaaggtccattttagcaa 39644586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 17279875 - 17279977
Alignment:
Q  88 ttaatggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgcttt 187  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||||  |||||||||||||||| |||    
T  17279875 ttaaaggggtttgctacaatagacctattcatttttatgaaggtctattttagcaaccagcacctttttacttggacacaaatacccatatttttgtttt 17279974  T
Q  188 ttg 190  Q
    |||    
T  17279975 ttg 17279977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 19237674 - 19237577
Alignment:
Q  94 gggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttgg 191  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || |||| | |||||| |||||||    
T  19237674 gggtttgctacaatagacccactcattttcatgaaggtctattttagcaaccaacaccttttcacttggacataaagacccttgtttttgttttttgg 19237577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 17280767 - 17280674
Alignment:
Q  97 tttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| ||||||    
T  17280767 tttgctacaattgacccactcattttcattaaggtctattttagcaaccaacaccttttcacttggacacaaatgcccatatttttgttttttg 17280674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 29375113 - 29374985
Alignment:
Q  95 ggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttggacc 194  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||||  | ||||||||||||||||||| |||| |||| |||||| |||||| |||    
T  29375113 ggtttgctacaatagatccactcattttcatgaaggtccattttagcaaggagcaccttttcacttggacaaaaatatccatgtttttgttttttgaacc 29375014  T
Q  195 aatcataactaaaggacaaaaatgtaatt 223  Q
    ||| | || ||||||||| || |||||||    
T  29375013 aattaaaattaaaggacacaattgtaatt 29374985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 10792477 - 10792551
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||||||||| ||||||||||||| |||||||    
T  10792477 atggggtttgctacaatagacccattccattttatgaaggtctattttagcaagcaacaccttttcatttggaca 10792551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 5860544 - 5860619
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaa 166  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||||||||||| ||||| |||||| ||||||||    
T  5860544 atggggtttgctacaatagacccactcatttttatgaaggtgtattttagcaacaaacacattttcatttggacaa 5860619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 8683924 - 8683866
Alignment:
Q  97 tttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacacctttt 155  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  8683924 tttgctacaatagacccactcattttcatgaaggtctattttagcaaccaacatctttt 8683866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 8238063 - 8238195
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    ||||||||||||||||||||| || ||||||| ||||| ||||||| || ||||||||||||||||| ||||||   || |||  |||||||| ||||||    
T  8238063 atggggtttgctacaatagactcactcatttttatgaaagtctattctatcaaccaacaccttttcaattggacccaaaaacctttatttttgttttttg 8238162  T
Q  191 gaccaatcataactaaaggacaaaaatgtaatt 223  Q
      | ||| | ||||||||| || ||||||||||    
T  8238163 agcaaattaaaactaaagggcacaaatgtaatt 8238195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 10793651 - 10793579
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||||||||||||||||||||| ||  ||| || ||||||||||||||||| |||||||||||||||||||||    
T  10793651 ggggtttgctacaatagacccactccattttatcaaggtctattttagcaagcaacaccttttcacttggaca 10793579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 7001847 - 7001715
Alignment:
Q  91 atggggtttgctacaatagaccca-ttcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgcttttt 189  Q
    |||| ||||||| ||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||||  |  |||| | |||||| |||||    
T  7001847 atggagtttgctgcaatagacccacttcatttt-atgaaggtctattttagcatgcaacaccttttcacttggacacaatgacccttgtttttgtttttt 7001749  T
Q  190 ggaccaatcataactaaaggacaaaaatgtaatt 223  Q
    |||| ||| | | |||||||  | ||||||||||    
T  7001748 ggacaaattaaatctaaagggaacaaatgtaatt 7001715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 25359496 - 25359566
Alignment:
Q  94 gggtttgctacaatagaccca-ttcattttcatgaaggtctattttagcaaccaacaccttttcacttggac 164  Q
    |||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| | ||||||    
T  25359496 gggtttgctacaatagactcacttcatttt-atgaaagtctattttagcaaccaacacctttttatttggac 25359566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 28523430 - 28523378
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaa 143  Q
    |||||||||||| ||||||||||||||  |||  |||||||||||||||||||    
T  28523430 atggggtttgctgcaatagacccattctattttgtgaaggtctattttagcaa 28523378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 8238908 - 8238812
Alignment:
Q  127 aaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttggaccaatcataactaaaggacaaaaatgtaatt 223  Q
    ||||| |||||||||||||||||  |||||| |||||||  || |||| |||||||| ||||||  | ||| | || |||||| || ||||||||||    
T  8238908 aaggtttattttagcaaccaacattttttcaattggacacaaaaacccttatttttgttttttgagcaaattaaaattaaagggcacaaatgtaatt 8238812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 12441780 - 12441728
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaa 143  Q
    ||||| ||||||||||||||||||    |||||||||||||| ||||||||||    
T  12441780 atgggatttgctacaatagacccacctcttttcatgaaggtccattttagcaa 12441728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 33471159 - 33471233
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33471159 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcatttggaca 33471233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 22671603 - 22671735
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttgga 192  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||| || ||||  |||||| | |||||| |||||| |    
T  22671603 ggggtttgctacaat-gacccactcattttcatgaaggtctattttaacaaccaacaccttttcacctgtacaaagatacccgtgtttttgttttttgaa 22671701  T
Q  193 ccaatcataactaaaggacaaaaatgtaattagc 226  Q
    ||||| | ||||||||| |||||| || ||||||    
T  22671702 ccaattaaaactaaaggccaaaaaggtcattagc 22671735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 33471921 - 33471854
Alignment:
Q  97 tttgctacaatagaccca-ttcattttcatgaaggtctattttagcaaccaacaccttttcacttggac 164  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||| ||||||    
T  33471921 tttgctacaatagacccacttcatttt-atgaaggtctattttagcaactagcaccttttcatttggac 33471854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 30667861 - 30667910
Alignment:
Q  94 gggtttgctacaatagacccattcattttcatgaaggtctattttagcaa 143  Q
    |||||||||||||||||||||    ||||||||||||| |||||||||||    
T  30667861 gggtttgctacaatagacccaccttttttcatgaaggtatattttagcaa 30667910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 16801969 - 16802099
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttgga 192  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    ||||||||||||||||||| ||||||||| |||||| |||||| |    
T  16801969 ggggtttgctacaatagacccactcattttcatgaaggtctattttagcaaggggcaccttttcacttggacaaaaatacccatgtttttgttttttgaa 16802068  T
Q  193 ccaatcataactaaaggacaaaaatgtaatt 223  Q
    ||||| | || || |||||| || |||||||    
T  16802069 ccaattaaaattataggacacaattgtaatt 16802099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 33980665 - 33980591
Alignment:
Q  18 attcaaaacaaagttcagcacatgtcgacaaaatgactgatgatataataacaattgatcatatatttagttaat 92  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33980665 attcaaaacaaagttcagcacatgtcgacaaaaggactgatgatataataacaattgatcatatatttagttaat 33980591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 16802756 - 16802624
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    ||||| |||||||||||||||||| ||||||| || |||||||||||||||||  |  |||||||||||||||||| |  ||||||||||||| ||||||    
T  16802756 atgggatttgctacaatagacccactcatttttataaaggtctattttagcaagaagtaccttttcacttggacaaaaggacccatatttttgttttttg 16802657  T
Q  191 gaccaatcataactaaaggacaaaaatgtaatt 223  Q
     |||||| | || ||||||||| ||||||||||    
T  16802656 aaccaattaaaattaaaggacacaaatgtaatt 16802624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 42026890 - 42026964
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  42026890 atggggtttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggaca 42026964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 42031765 - 42031693
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  42031765 ggggtttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggaca 42031693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 17239480 - 17239380
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||  | |||||||||| |||||| | || |||||| |||||| ||||||    
T  17239480 atggggtttgctacaatagacccactcatttttatgaaggtctattttagcaagtagcaccttttcatttggaccaaaaaacccatgtttttgttttttg 17239381  T
Q  191 g 191  Q
    |    
T  17239380 g 17239380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 34269156 - 34269084
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||||| ||||||||||||| |||||||    
T  34269156 ggggtttgctacaatagacccattccattttatgaaggtctattttagcaagcaacaccttttcatttggaca 34269084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 34275391 - 34275319
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||||| ||||||||||||| |||||||    
T  34275391 ggggtttgctacaatagacccattccattttatgaaggtctattttagcaagcaacaccttttcatttggaca 34275319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 34267970 - 34268044
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||||||||||||||||||||||| ||  ||| || ||||||||||||||||| |||||||||||||||||||||    
T  34267970 atggggtttgctacaatagacccactccattttatcaaggtctattttagcaagcaacaccttttcacttggaca 34268044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 24790918 - 24790803
Alignment:
Q  97 tttgctacaatagaccca-ttcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttggacca 195  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| || |||||| ||||||||||||||  || |||| |||||||| ||||||| | |    
T  24790918 tttgctacaatagacccacttcatttt-atgaaggtctattttagaaagcaacactttttcacttggacacaaaaacccctatttttgttttttgggcaa 24790820  T
Q  196 atcataactaaaggaca 212  Q
    || | | ||||||||||    
T  24790819 attaaatctaaaggaca 24790803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 17238593 - 17238683
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttg 183  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||  | |||||||||  |||||| | || |||||| ||||||    
T  17238593 ggggtttgctacaatagacccactcatttttatgaaggtctattttagcaagtagcaccttttcgtttggaccaaaagacccatgtttttg 17238683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 34361210 - 34361282
Alignment:
Q  97 tttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaa 169  Q
    ||||||| |||||| ||| | ||||| |||||||| |||||||||||||||| |||||| |||||||||||||    
T  34361210 tttgctataatagaaccacttatttttatgaaggtttattttagcaaccaacgccttttgacttggacaagaa 34361282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 30972095 - 30972006
Alignment:
Q  76 tcatatatttagttaatggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||||||||||  ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  30972095 tcatatatttatataaaggggtttgctacaatagacccactcaatttcatgaaggtctattttagcaaccaacaccttttcatttggaca 30972006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 16106095 - 16105999
Alignment:
Q  94 gggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||  ||| ||||  |||||| ||||||    
T  16106095 gggtttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaatgcccacgtttttgttttttg 16105999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 16113335 - 16113239
Alignment:
Q  94 gggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||  ||| ||||  |||||| ||||||    
T  16113335 gggtttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaatgcccacgtttttgttttttg 16113239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 16101519 - 16101616
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||||||||||||||||  ||| ||||  |||||| ||||||    
T  16101519 ggggtttgctacaatagacacactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaatgcccacgtttttgttttttg 16101616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 32744006 - 32744139
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttgga 192  Q
    ||||||||||||| |||||  ||||||||| ||||||||||||||||||||||||||||||||||| |||||||  ||  ||||   |||  ||||||||    
T  32744006 ggggtttgctacagtagacttattcatttttatgaaggtctattttagcaaccaacaccttttcacgtggacaaagatgtccatgaatttattttttgga 32744105  T
Q  193 ccaatcataactaaaggacaaaaatgtaattagc 226  Q
    ||||| | ||||||| ||||||||  ||||||||    
T  32744106 ccaattaaaactaaaagacaaaaagataattagc 32744139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 30971285 - 30971353
Alignment:
Q  97 tttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  30971285 tttgctacaatagacccactcattttcatgaaggtctattttagcaaccatcactttttcacttggaca 30971353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 1636848 - 1636943
Alignment:
Q  97 tttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttgga 192  Q
    ||||||||||||||  || |||||||||||||| |||||||| |||||||||| ||||||| |||||||  || |||| | |||||| ||||||||    
T  1636848 tttgctacaatagattcactcattttcatgaagatctatttttgcaaccaacatcttttcatttggacacaaagacccttgtttttgttttttgga 1636943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 23220002 - 23220100
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgcttttt 189  Q
    ||||||||||||||||||||||||  | |||| |||||||||||||||||||| |  ||||||||   || ||||  |||||||||||||||| |||||    
T  23220002 atggggtttgctacaatagacccacccttttttatgaaggtctattttagcaagctgcacctttttcttttgacataaatacccatatttttgtttttt 23220100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 1274181 - 1274129
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaa 143  Q
    |||||||||||||||||||||| | | ||||||||||||||||||||||||||    
T  1274181 atggggtttgctacaatagaccaacttattttcatgaaggtctattttagcaa 1274129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 5152523 - 5152427
Alignment:
Q  95 ggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttgg 191  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||||||    |||||||||| |||||| | || | |||| |||||| |||||||    
T  5152523 ggtttgctacaatagacccgctcatttttatgaaggtctattttagcaagtggcaccttttcatttggaccaaaagatccatgtttttgttttttgg 5152427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 42757602 - 42757652
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaa 143  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||||||||    
T  42757602 ggggtttgctacaatagacccactcatttttatgaaggtttattttagcaa 42757652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 223
Target Start/End: Original strand, 28965773 - 28965901
Alignment:
Q  95 ggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttggacc 194  Q
    ||||| ||| |||||||||| | ||||| ||||| || ||||||| |||| |||||||||||| ||||||   || |||| |||||||| ||||||  |     
T  28965773 ggttttctataatagacccacttatttttatgaaagtttattttatcaacaaacaccttttcaattggacctaaaaacccttatttttgttttttgagca 28965872  T
Q  195 aatcataactaaaggacaaaaatgtaatt 223  Q
    ||| | ||||||||| || ||||||||||    
T  28965873 aattaaaactaaagggcacaaatgtaatt 28965901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 18573508 - 18573560
Alignment:
Q  91 atggggtttgctacaatagacccattcatttt-catgaaggtctattttagcaa 143  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  18573508 atggggtttgctacaatagaccca-ccattttacatgaaggtctattttagcaa 18573560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 12836696 - 12836744
Alignment:
Q  95 ggtttgctacaatagacccattcattttcatgaaggtctattttagcaa 143  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||    
T  12836696 ggtttgctacaatagacccacattttttcatgaaggtctattttagcaa 12836744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 23220946 - 23220854
Alignment:
Q  97 tttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgcttttt 189  Q
    |||||||||||||||||   | |||| |||||||||||||||||||| |  ||||||||   || ||||  |||||||||||||||| |||||    
T  23220946 tttgctacaatagaccctcccttttttatgaaggtctattttagcaagctgcacctttttcttttgacataaatacccatatttttgtttttt 23220854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 3743124 - 3743175
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagca 142  Q
    |||| ||||||||||||||| ||  ||||||| |||||||||||||||||||    
T  3743124 atggagtttgctacaatagatcccctcatttttatgaaggtctattttagca 3743175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 18575910 - 18575852
Alignment:
Q  97 tttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacacctttt 155  Q
    |||||||||||||| ||| ||||||| |||||||   |||||||||| |||||||||||    
T  18575910 tttgctacaatagatccactcattttgatgaaggagcattttagcaagcaacacctttt 18575852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 28966586 - 28966536
Alignment:
Q  97 tttgctacaatagacccattcattttcatgaaggtctattttagcaaccaa 147  Q
    |||||||||||| ||| | ||||||| |||||| |||||||||||||||||    
T  28966586 tttgctacaataaaccaactcatttttatgaagttctattttagcaaccaa 28966536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 15869793 - 15869720
Alignment:
Q  96 gtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaa 169  Q
    ||||||||||||| ||||| | ||||| |||||| |  | |||||||| ||||||||||||| |||||| ||||    
T  15869793 gtttgctacaataaacccacttatttttatgaagattaactttagcaatcaacaccttttcatttggactagaa 15869720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 16591595 - 16591526
Alignment:
Q  96 gtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  16591595 gtttgctacaatagacccatttaatttcatgaaggtctattttagcaaccaacaccttttcacttggaca 16591526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 18767639 - 18767569
Alignment:
Q  95 ggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    ||||||||||||||||| || ||||||| || |||||||||||||||||||||||||||||||||| ||||    
T  18767639 ggtttgctacaatagactcactcatttttataaaggtctattttagcaaccaacaccttttcacttagaca 18767569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 45631211 - 45631083
Alignment:
Q  93 ggggtttgctacaatagaccca-ttcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttgg 191  Q
    |||||||| ||||||||||||| |||||||| |||||||||||||||||||| | |||||||| ||||||||||  || |||| |||||||| |||||||    
T  45631211 ggggtttgttacaatagacccacttcatttt-atgaaggtctattttagcaagctacacctttacacttggacataaaaacccttatttttgttttttgg 45631113  T
Q  192 accaatcataactaaaggacaaaaatgtaa 221  Q
       ||| | | |||||||||| ||||||||    
T  45631112 gtaaattaaatctaaaggacacaaatgtaa 45631083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 5483988 - 5483904
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaataccca 175  Q
    ||||| ||||||| |||||||| | |||||||||| |||||||||||||||| |||||||||||||| |||||||| || |||||    
T  5483988 atgggatttgctataatagaccaactcattttcataaaggtctattttagcatccaacaccttttcaattggacaaaaacaccca 5483904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 9244251 - 9244313
Alignment:
Q  104 caatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaa 166  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  9244251 caatagacccactcatttttatgaaggtctattttagcatccaacaccttttcagttggacaa 9244313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 39240928 - 39240876
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaa 143  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  39240928 atggggtttgctacaatagacccacccattttcatgaaggtctattttagcaa 39240876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 9243988 - 9244061
Alignment:
Q  91 atggggtttgctacaatagaccca-ttcattttcatgaaggtctattttagcaaccaacaccttttcacttggac 164  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||| | | |||||||||| ||||||    
T  9243988 atggggtttgctacaatagacccacttcatttt-atgaaggtctattttagcaccgagcaccttttcatttggac 9244061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 29558160 - 29558219
Alignment:
Q  105 aatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 165  Q
    |||||||||| ||||||| |||||||||||||| ||||||||||||||||| |||||||||    
T  29558160 aatagacccactcatttttatgaaggtctattt-agcaaccaacacctttttacttggaca 29558219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 32667457 - 32667406
Alignment:
Q  92 tggggtttgctacaatagacccattcattttcatgaaggtctattttagcaa 143  Q
    |||||||||||||||||||||||  | ||||| |||||||||||||||||||    
T  32667457 tggggtttgctacaatagacccaccctttttcttgaaggtctattttagcaa 32667406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 18236651 - 18236751
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca-agaatacccatatttttgcttttt 189  Q
    ||||||||||||| |||||||||  ||  |||  |||||||||||||||||||    |||||||||  ||||||| | |||||||||| |||||||||||    
T  18236651 atggggtttgctataatagacccgctctattttgtgaaggtctattttagcaagatgcaccttttcctttggacacaaaatacccatacttttgcttttt 18236750  T
Q  190 g 190  Q
    |    
T  18236751 g 18236751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 32568217 - 32568162
Alignment:
Q  134 attttagcaaccaacaccttttcacttggacaagaatacccatatttttgctttttg 190  Q
    ||||||||||||| |||||||| |||||||| | |||| ||| ||||||||||||||    
T  32568217 attttagcaaccatcacctttttacttggaccaaaatatcca-atttttgctttttg 32568162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 45330 - 45396
Alignment:
Q  94 gggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcactt 160  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    |||||||||||||    
T  45330 gggtttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 45396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 24722 - 24807
Alignment:
Q  91 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcacttggacaagaatacccat 176  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||||| ||| ||  | ||||||| || ||| | |||||||||    
T  24722 atgggttttgctacaatagacccactcattttcatgaagttctattttaacaagcattatcttttcatttagactaaaatacccat 24807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 35003 - 35048
Alignment:
Q  97 tttgctacaatagacccattcattttcatgaaggtctattttagca 142  Q
    ||||||||||||||||||    ||||||||||||||||||||||||    
T  35003 tttgctacaatagacccaccttttttcatgaaggtctattttagca 35048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 35865 - 35816
Alignment:
Q  93 ggggtttgctacaatagacccattcattttcatgaaggtctattttagca 142  Q
    |||||||||||||||||||||     ||||||||||||||||||||||||    
T  35865 ggggtttgctacaatagacccgccttttttcatgaaggtctattttagca 35816  T

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Target: scaffold0676 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 3168 - 3208
Alignment:
Q  103 acaatagacccattcattttcatgaaggtctattttagcaa 143  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  3168 acaatagacccgctcattttcatgaaggtctattttagcaa 3208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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