View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_34 (Length: 262)
Name: NF7719_low_34
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 25207880 - 25207631
Alignment:
| Q |
1 |
tcactcggtgctttgtgaactatattgcctgacatttctccgcttacgcttcaatgactgatactgagtggccggcgtggcataagctata------gct |
94 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
25207880 |
tcactcggtgacttgtgaactatattgcctgacatttctccgcttacgcttcaacgactgatactgagtggccggcgtggcataagctataatttatgct |
25207781 |
T |
|
| Q |
95 |
ccagagcaatgtacaaaggagtacttgcaagctcctgattttgttcaatggaattacttgccaagtcattgattctacagatggcagtcagtggatcaac |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25207780 |
ccagagcaatgtacaaaggagtacttgcaagctcctgattttgttcaatggaattactttccaagtcattgattctacagatggcagtcagtggatcaac |
25207681 |
T |
|
| Q |
195 |
accatgttcctcatgtaacagaacctcataattagcaggccttggcagat |
244 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25207680 |
accatgttcctcatgtaacagaacctcagaattagcaggccttggcagat |
25207631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 19810961 - 19811200
Alignment:
| Q |
1 |
tcactcggtgctttgtgaactatattgcctgacatttctccgcttacgcttcaatgactgatactgagtggccggcgtggcataagctata----gctcc |
96 |
Q |
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||||| ||||| |||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||| || ||||||| ||||| |
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| T |
19810961 |
tcactaggtgccttgttaactatattgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggaatgagctataatctgctcc |
19811060 |
T |
|
| Q |
97 |
agagcaatgtacaaaggagtacttgcaagctcctgattttgttcaatggaattacttgccaagtcattgattctacagatggcagtcagtggatcaacac |
196 |
Q |
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| T |
19811061 |
atagcaatgtataaaggagtacctgcaagcttcgaattctgttcaatggaagcaattgccagatctttgattctgcacatggcagtcaatggatcaacac |
19811160 |
T |
|
| Q |
197 |
catgttcctcatgtaacagaacctcataattagcaggcct |
236 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||||||| |
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| T |
19811161 |
catgttcctcatgtaatagaacctcaatattagcaggcct |
19811200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 32687268 - 32687487
Alignment:
| Q |
21 |
tatattgcctgacatttctccgcttacgcttcaatgactgatactgagtggccggcgtggcataagctata----gctccagagcaatgtacaaaggagt |
116 |
Q |
| |
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|||| |||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||| ||||||| |||||| ||||||||| |||||||| |
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| T |
32687268 |
tatactgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctgctccatagcaatgtataaaggagt |
32687367 |
T |
|
| Q |
117 |
acttgcaagctcctgattttgttcaatggaattacttgccaagtcattgattctacagatggcagtcagtggatcaacaccatgttcctcatgtaacaga |
216 |
Q |
| |
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|| ||||||||| ||| |||||||||||| || |||||| ||| |||||||| || |||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
32687368 |
acctgcaagctctgaattctgttcaatggaagtaattgccaggtccttgattctgcacatggcagtcaatggatcaacaccatgttcctcgtgtaacaga |
32687467 |
T |
|
| Q |
217 |
acctcataattagcaggcct |
236 |
Q |
| |
|
|||||| |||||||||||| |
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| T |
32687468 |
acctcaatattagcaggcct |
32687487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 14767560 - 14767655
Alignment:
| Q |
139 |
tcaatggaattacttgccaagtcattgattctacagatggcagtcagtggatcaacaccatgttcctcatgtaacagaacctcataattagcaggc |
234 |
Q |
| |
|
|||||||| ||| ||| || |||||||||||| ||| || ||| | |||||||| |||||||||||||||||| ||||||||| ||||||||||| |
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| T |
14767560 |
tcaatggagttaattgtcaggtcattgattctgcaggtgatagttaatggatcaataccatgttcctcatgtaaaagaacctcaaaattagcaggc |
14767655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 1199436 - 1199675
Alignment:
| Q |
1 |
tcactcggtgctttgtgaactatattgcctgacatttctccgcttacgcttcaatgactgatactgagtggccggcgtggcataagctata----gctcc |
96 |
Q |
| |
|
||||| ||||| |||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||| ||||||| ||||| |
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| T |
1199436 |
tcactaggtgccttgttaactatattgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctgctcc |
1199535 |
T |
|
| Q |
97 |
agagcaatgtacaaaggagtacttgcaagctcctgattttgttcaatggaattacttgccaagtcattgattctacagatggcagtcagtggatcaacac |
196 |
Q |
| |
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| | ||||||| |||||||||| |||||||| | ||| |||||||||||| | |||||| || |||||||| || |||||||||| ||||||||||| |
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| T |
1199536 |
ataacaatgtataaaggagtacctgcaagcttcgaattctgttcaatggaagcaattgccagatctttgattctgcacatggcagtcaatggatcaacac |
1199635 |
T |
|
| Q |
197 |
catgttcctcatgtaacagaacctcataattagcaggcct |
236 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
1199636 |
catgttcctcatgtaatagaacctcaatattagcaggcct |
1199675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 26942015 - 26941801
Alignment:
| Q |
26 |
tgcctgacatttctccgcttacgcttcaatgactgatactgagtggccggcgtggcataagctata----gctccagagcaatgtacaaaggagtacttg |
121 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||| |||||||||| |||||||||| ||||||| |||||| ||||||||| |||||||||| || |
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| T |
26942015 |
tgcctgacatttctccgcttacgcatcaacgactggtactgagtggtaggcgtggcatgagctataatccgctccatagcaatgtataaaggagtacctg |
26941916 |
T |
|
| Q |
122 |
caagctcctgattttgttcaatggaattacttgccaagtcattgattctacagatggcagtcagtggatcaacaccatgttcctcatgtaacagaacctc |
221 |
Q |
| |
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|||| || | ||| ||||||| |||| | ||| || |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26941915 |
caagttcttaattctgttcaacggaagtcattgtcaggtcattgattctgcacgtggcagtcaatggatcaacaccatgttcctcatgtaacagaacctc |
26941816 |
T |
|
| Q |
222 |
ataattagcaggcct |
236 |
Q |
| |
|
||||||||||||||| |
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|
| T |
26941815 |
ataattagcaggcct |
26941801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 18295489 - 18295685
Alignment:
| Q |
14 |
tgtgaactatattgcctgacatttctccgcttacgcttcaatgactgatactgagtggccggcgtggcataagctata----gctccagagcaatgtaca |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||| || |||||||| | ||||| | | | || ||| ||||| | |
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|
| T |
18295489 |
tgtgaactatattgcctgacctttctccgcttacgcctcaatgacttgtactgagtcgcaggcgtggcctgagctacaatctgtttcatagccatgtata |
18295588 |
T |
|
| Q |
110 |
aaggagtacttgcaagctcctgattttgttcaatggaattacttgccaagtcattgattctacagatggcagtcagtggatcaacaccatgttcctc |
206 |
Q |
| |
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||||||| ||| ||||||||| ||||||||||||||| |||||| | | |||| || |||||| ||| || ||| ||||||||||||||||| |
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|
| T |
18295589 |
aaggagtgtctgcgtactcctgattctgttcaatggaattaattgccagggccctgatcctgcagatgacagacaatggctcaacaccatgttcctc |
18295685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 322292 - 322245
Alignment:
| Q |
22 |
atattgcctgacatttctccgcttacgcttcaatgactgatactgagt |
69 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
322292 |
atattgcctgacatttctccgcttacgcctcaatgactggtactgagt |
322245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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