View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7719_low_35 (Length: 259)

Name: NF7719_low_35
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7719_low_35
NF7719_low_35
[»] chr1 (3 HSPs)
chr1 (9-259)||(34988849-34989099)
chr1 (9-259)||(34979792-34980042)
chr1 (9-112)||(34975134-34975237)
[»] chr3 (21 HSPs)
chr3 (20-259)||(22657665-22657904)
chr3 (8-256)||(22104345-22104593)
chr3 (9-256)||(22179040-22179287)
chr3 (36-259)||(21936803-21937026)
chr3 (20-256)||(22034163-22034387)
chr3 (20-130)||(22114026-22114136)
chr3 (14-256)||(22621516-22621758)
chr3 (20-215)||(22648801-22648997)
chr3 (19-103)||(30990042-30990126)
chr3 (20-118)||(22052380-22052478)
chr3 (20-130)||(22186634-22186744)
chr3 (20-130)||(22010468-22010578)
chr3 (161-256)||(22114860-22114955)
chr3 (21-130)||(18967695-18967804)
chr3 (161-256)||(18967581-18967676)
chr3 (20-106)||(21945270-21945356)
chr3 (20-98)||(22616001-22616079)
chr3 (161-246)||(21945399-21945484)
chr3 (139-256)||(22615843-22615960)
chr3 (165-256)||(30989901-30989992)
chr3 (61-94)||(22443500-22443533)
[»] chr8 (1 HSPs)
chr8 (140-211)||(27294346-27294417)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 34988849 - 34989099
Alignment:
Q  9 gacatcactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggc 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34988849 gacaacactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggc 34988948  T
Q  109 agcaacctcgtgatcttggatgcatatctccactccataaggttgctcatttgctcaaaactatgattcctcgccatcaaatagcgtcggagattcaaga 208  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||| |||||||| ||||||||| || |||||||||||    
T  34988949 agcaaccttgtgatcctggatgcatatctccactccataaggttgctcgttttcccaaaactatgactcctcgccgtcaaatagcttctgagattcaaga 34989048  T
Q  209 cattaagacagttgtttgtgggatcaaagaaagaagtgatagatatggttt 259  Q
    ||| ||| ||||||||||||| ||||||||||||||||| |||||||||||    
T  34989049 catcaagtcagttgtttgtggaatcaaagaaagaagtgaaagatatggttt 34989099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 34979792 - 34980042
Alignment:
Q  9 gacatcactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggc 108  Q
    |||| |||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34979792 gacaacactactgaaggagccaagatgtgggtgaagcaggttacggaagtagcttttcgtatagaagatgtcattgatgattatatgatccatgtagggc 34979891  T
Q  109 agcaacctcgtgatcttggatgcatatctccactccataaggttgctcatttgctcaaaactatgattcctcgccatcaaatagcgtcggagattcaaga 208  Q
    ||||||||||||||| |||||||||||||| |||| ||||| || |||| |||||||||||||||| |||||  | ||||||||| || |||||||||||    
T  34979892 agcaacctcgtgatcctggatgcatatctctactcaataagattcctcacttgctcaaaactatgactcctcttcgtcaaatagcatctgagattcaaga 34979991  T
Q  209 cattaagacagttgtttgtgggatcaaagaaagaagtgatagatatggttt 259  Q
    ||| ||| ||||||||||||||||||||||||||||||| |||||||||||    
T  34979992 catcaagtcagttgtttgtgggatcaaagaaagaagtgaaagatatggttt 34980042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 34975134 - 34975237
Alignment:
Q  9 gacatcactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggc 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  34975134 gacaacactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttctcatagaagatgtcattgatgattatatgatccatgtagggc 34975233  T
Q  109 agca 112  Q
    ||||    
T  34975234 agca 34975237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 22657904 - 22657665
Alignment:
Q  20 tgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaacctcgt 119  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22657904 tgaaggagccaaaatgtgggtgaagcaggttagggaaatagcttttcgcatagaagatgtcattgatgattatatgatccatgtggggcagcaacctcgt 22657805  T
Q  120 gatcttggatgcatatctccactccataaggttgctcatttgctcaaaactatgattcctcgccatcaaatagcgtcggagattcaagacattaagacag 219  Q
    |||    ||||| | |||| ||||||| |  || |||| |||||||||||||||| | |||||| |||||||||||   |||||||||| |||||| ||     
T  22657804 gattcccgatgcgtttctctactccatgatattcctcacttgctcaaaactatgaattctcgccgtcaaatagcgttcaagattcaagagattaagtcat 22657705  T
Q  220 ttgtttgtgggatcaaagaaagaagtgatagatatggttt 259  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  22657704 ttgtttgtgggatcaaagaaagaagtgaaagatatggttt 22657665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 22104345 - 22104593
Alignment:
Q  8 ggacatcactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtaggg 107  Q
    ||||| ||||| |||||||| |||||  |||||||||||  |||||| ||  |||||||| ||||||||| |||||||||| |||||||||||||||||     
T  22104345 ggacaacactagtgaaggagtcaaaacatgggtgaagcaacttagggtagcagcttttcgcatagaagatatcattgatgagtatatgatccatgtagga 22104444  T
Q  108 cagcaacctcgtgatcttggatgcatatctccactccataaggttgctcatttgctcaaaactatgattcctcgccatcaaatagcgtcggagattcaag 207  Q
    ||||| |||||||||| ||||||  || ||  |||  ||||| ||||||| || |||||||||||||  |||||||||| ||||||  | ||||||||||    
T  22104445 cagcagcctcgtgatcctggatgtgtagctatacttgataagattgctcacttactcaaaactatgacccctcgccatcgaatagcagctgagattcaag 22104544  T
Q  208 acattaagacagttgtttgtgggatcaaagaaagaagtgatagatatgg 256  Q
    |  ||||| ||  |||| |||||||||| |||||||||||  |||||||    
T  22104545 atgttaagtcatctgttcgtgggatcaaggaaagaagtgaacgatatgg 22104593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 9 - 256
Target Start/End: Original strand, 22179040 - 22179287
Alignment:
Q  9 gacatcactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggc 108  Q
    |||| ||||| |||||||| |||||  |||||||||||  |||||| ||  |||||||| ||||||||| |||||||||||||| |||||||||| || |    
T  22179040 gacaacactagtgaaggagtcaaaacatgggtgaagcaacttagggtagcagcttttcgcatagaagatatcattgatgattatttgatccatgttggac 22179139  T
Q  109 agcaacctcgtgatcttggatgcatatctccactccataaggttgctcatttgctcaaaactatgattcctcgccatcaaatagcgtcggagattcaaga 208  Q
    | ||||||||||||| ||||||  || ||  | |  ||||| || |||| || |||||||| ||||  | |||||||| ||||||  | |||||||||||    
T  22179140 aacaacctcgtgatcctggatgtgtagctgtatttgataagattactcacttactcaaaaccatgacccgtcgccatcgaatagcagctgagattcaaga 22179239  T
Q  209 cattaagacagttgtttgtgggatcaaagaaagaagtgatagatatgg 256  Q
    ||||||| ||  |||| || ||||||| ||||||||||||| ||||||    
T  22179240 cattaagtcatctgttcgtaggatcaaggaaagaagtgataaatatgg 22179287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 259
Target Start/End: Original strand, 21936803 - 21937026
Alignment:
Q  36 tgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaacctcgtgatcttggatgcatat 135  Q
    |||||||||||| |||||||||  |||||| | ||||||||| |||||||||| ||||||||||||||||| ||| | |||| || || ||||||  ||     
T  21936803 tgggtgaagcagcttagggaagcagctttttgcatagaagatatcattgatgaatatatgatccatgtaggacagaagcctcatggtcatggatgtgtag 21936902  T
Q  136 ctccactccataaggttgctcatttgctcaaaactatgattcctcgccatcaaatagcgtcggagattcaagacattaagacagttgtttgtgggatcaa 235  Q
    ||  ||| |||||  || |||| || |||| ||| ||||   ||||||||| ||||||  | |||||||||||||||||| ||  |||| ||||||||||    
T  21936903 ctttacttcataatatttctcacttactcagaaccatgacctctcgccatcgaatagcagctgagattcaagacattaagtcatctgttcgtgggatcaa 21937002  T
Q  236 agaaagaagtgatagatatggttt 259  Q
     |||||||||||||||||| ||||    
T  21937003 ggaaagaagtgatagatatagttt 21937026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 22034163 - 22034387
Alignment:
Q  20 tgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaacctcgt 119  Q
    |||||||| |||||| |||||||||||  ||||||| |  |||||||| ||||||||| |||||||||||||| |||||||  |||| |||||||||||     
T  22034163 tgaaggagtcaaaatatgggtgaagcaacttagggaggcagcttttcgcatagaagatatcattgatgattatttgatccagttaggacagcaacctcga 22034262  T
Q  120 gatcttggatgcatatctccactccataaggttgctcatttgctcaaaactatgattcctcgccatcaaatagcgtcggagattcaagacattaagacag 219  Q
    |||| |||||| |||  |  ||| |||||            ||||||||||||||| ||||| | || |||||| || ||||| |||||  ||||||||     
T  22034263 gatcctggatgtatagatttacttcataa------------gctcaaaactatgatccctcgtcgtcgaatagcatctgagatacaagatgttaagacat 22034350  T
Q  220 ttgtttgtgggatcaaagaaagaagtgatagatatgg 256  Q
     |||| ||||||||| |||||||||||| ||||||||    
T  22034351 ctgttcgtgggatcacagaaagaagtgaaagatatgg 22034387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 22114026 - 22114136
Alignment:
Q  20 tgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaacctcgt 119  Q
    |||||||| |||||| |||||||||||  ||||||| |  |||||||  ||||||||| |||||||||||||| ||||||| ||||| |||||||||||     
T  22114026 tgaaggagtcaaaatatgggtgaagcaacttagggaggcagcttttcacatagaagatatcattgatgattatttgatccaggtaggacagcaacctcga 22114125  T
Q  120 gatcttggatg 130  Q
    |||| ||||||    
T  22114126 gatcctggatg 22114136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 22621758 - 22621516
Alignment:
Q  14 cactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaa 113  Q
    ||||| |||||||| |||||  |||||||| || ||||| |||    | ||||| ||||||||  |||||||||||||||||||||||||  | || ||     
T  22621758 cactagtgaaggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgtgagacaacag 22621659  T
Q  114 cctcgtgatcttggatgcatatctccactccataaggttgctcatttgctcaaaactatgattcctcgccatcaaatagcgtcggagattcaagacatta 213  Q
    |||||| ||||||| || ||  ||  |||||||||  ||  ||| ||  ||||||||||||| |||||||||| |||||||||  ||||||||| |||||    
T  22621658 cctcgtaatcttgggtgtatggctttactccataatattagtcacttagtcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcatta 22621559  T
Q  214 agacagttgtttgtgggatcaaagaaagaagtgatagatatgg 256  Q
    || ||  |||   ||||||||| ||||||||||| || |||||    
T  22621558 agtcatctgtgcatgggatcaaggaaagaagtgaaaggtatgg 22621516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 22648997 - 22648801
Alignment:
Q  20 tgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaa-gatgtcattgatgattatatgatccatgtagggcagcaacctcg 118  Q
    |||||||| ||||  ||||||||||||  |||| ||||  ||||| || |||||| ||| |||||||||||||||||||| || | |  ||||| |||||    
T  22648997 tgaaggagtcaaatcgtgggtgaagcaacttagagaagcagctttccgcatagaaagatatcattgatgattatatgatctatatggaacagcagcctcg 22648898  T
Q  119 tgatcttggatgcatatctccactccataaggttgctcatttgctcaaaactatgattcctcgccatcaaatagcgtcggagattcaagacattaag 215  Q
    |||||| |||||  || ||  |||||||||| ||||| | || |||||||| ||||    |||||||||||| || || ||||||||||||||||||    
T  22648897 tgatctcggatgtctagctttactccataagattgcttacttactcaaaacaatgaaagatcgccatcaaattgcatccgagattcaagacattaag 22648801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 30990126 - 30990042
Alignment:
Q  19 ctgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgt 103  Q
    ||||||||| |||||  ||||||||||||||||||||||  |||||||| ||||||||| |||| ||||||||| ||||||||||    
T  30990126 ctgaaggagtcaaaacatgggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgt 30990042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 22052380 - 22052478
Alignment:
Q  20 tgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaacctcg 118  Q
    |||||||| |||||| |||||||||||  ||||||| |  |||||||| ||||||||| |||||||||||||| ||||||| ||||| || ||||||||    
T  22052380 tgaaggagtcaaaatatgggtgaagcaacttagggaggcagcttttcgcatagaagatatcattgatgattatttgatccaggtaggacaacaacctcg 22052478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 22186634 - 22186744
Alignment:
Q  20 tgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaacctcgt 119  Q
    |||||||| |||||| |||||||||||  |||||||||  |||||||  ||||||||| |||||||||||||| ||||||| ||| | || ||||||||     
T  22186634 tgaaggagtcaaaatatgggtgaagcaacttagggaagcagcttttcacatagaagatatcattgatgattatttgatccaggtacgacaacaacctcga 22186733  T
Q  120 gatcttggatg 130  Q
    |||| ||||||    
T  22186734 gatcctggatg 22186744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 22010468 - 22010578
Alignment:
Q  20 tgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaacctcgt 119  Q
    |||||||| |||||| |||||||||||  |||||||||  |||||||  ||||||||| |||||||||||||| ||||||| ||| | || |||||| |     
T  22010468 tgaaggagtcaaaatatgggtgaagcaacttagggaagcagcttttcacatagaagatatcattgatgattatttgatccaggtacgacaacaaccttga 22010567  T
Q  120 gatcttggatg 130  Q
    |||| ||||||    
T  22010568 gatcctggatg 22010578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 22114860 - 22114955
Alignment:
Q  161 gctcaaaactatgattcctcgccatcaaatagcgtcggagattcaagacattaagacagttgtttgtgggatcaaagaaagaagtgatagatatgg 256  Q
    ||||||||||||||| ||||| | || |||||| || ||||| |||||  ||||||||  |||| ||||||||| |||||||||||| ||||||||    
T  22114860 gctcaaaactatgatccctcgtcgtcgaatagcatctgagatacaagattttaagacatctgttcgtgggatcacagaaagaagtgaaagatatgg 22114955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 18967804 - 18967695
Alignment:
Q  21 gaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaacctcgtg 120  Q
    |||||||  ||||| ||| |||||||||||||| |||   ||||||| |||||| |  || ||||||||||| ||||||||||||| ||||| ||| |||    
T  18967804 gaaggagtgaaaatatggttgaagcaggttaggaaagcatcttttcgcatagaaaacatcgttgatgattatgtgatccatgtaggccagcagccttgtg 18967705  T
Q  121 atcttggatg 130  Q
    ||| ||||||    
T  18967704 atcctggatg 18967695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 18967676 - 18967581
Alignment:
Q  161 gctcaaaactatgattcctcgccatcaaatagcgtcggagattcaagacattaagacagttgtttgtgggatcaaagaaagaagtgatagatatgg 256  Q
    |||||||||| |||  | ||||||||||||||| |  ||||||| |||||||||| ||  ||||||| ||||||| ||||||||||| | ||||||    
T  18967676 gctcaaaactttgacccttcgccatcaaatagcatatgagattcgagacattaagtcatatgtttgtcggatcaaggaaagaagtgacaaatatgg 18967581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 21945270 - 21945356
Alignment:
Q  20 tgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagg 106  Q
    |||| ||| |||||| |||||||||||  ||||||  |  |||||||| ||||||||| |||||||||||||| ||||||| |||||    
T  21945270 tgaaagagtcaaaatatgggtgaagcaacttagggtggcagcttttcgcatagaagatatcattgatgattatttgatccaggtagg 21945356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 22616079 - 22616001
Alignment:
Q  20 tgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatc 98  Q
    |||||| | |||||| |||||||||||||| |  | ||| |||||||||||||||||| |||| ||||| |||||||||    
T  22616079 tgaaggggtcaaaatatgggtgaagcaggtgataggagtagcttttcgtatagaagatatcatagatgaatatatgatc 22616001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 21945399 - 21945484
Alignment:
Q  161 gctcaaaactatgattcctcgccatcaaatagcgtcggagattcaagacattaagacagttgtttgtgggatcaaagaaagaagtg 246  Q
    ||||||||||||||| ||||| | || |||||| || |||||||||||  ||||| ||  |||| |||||||||| ||||||||||    
T  21945399 gctcaaaactatgatccctcgtcgtcgaatagcatctgagattcaagatgttaagtcatatgttcgtgggatcaaggaaagaagtg 21945484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 22615960 - 22615843
Alignment:
Q  139 cactccataaggttgctcatttgctcaaaactatgattcctcgccatcaaatagcgtcggagattcaagacattaagacagttgtttgtgggatcaaaga 238  Q
    ||||||||||| ||| ||| ||| |||||||| |||| |||||||||| ||| | |||  ||||||||||  ||||| |   |||||||  |||||| ||    
T  22615960 cactccataagattgttcaattgatcaaaactttgatccctcgccatcgaattgggtcaaagattcaagaagttaagtcgtctgtttgtatgatcaagga 22615861  T
Q  239 aagaagtgatagatatgg 256  Q
    ||||||||| ||||||||    
T  22615860 aagaagtgaaagatatgg 22615843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 30989992 - 30989901
Alignment:
Q  165 aaaactatgattcctcgccatcaaatagcgtcggagattcaagacattaagacagttgtttgtgggatcaaagaaagaagtgatagatatgg 256  Q
    |||||| |||| ||||| | || |||||| || |||||||||||||||||| |   |||| ||| |||||| ||||||||||| ||||||||    
T  30989992 aaaactgtgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaagatatgg 30989901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 22443533 - 22443500
Alignment:
Q  61 cttttcgtatagaagatgtcattgatgattatat 94  Q
    |||||| |||||||||||||||||||||||||||    
T  22443533 cttttcatatagaagatgtcattgatgattatat 22443500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 27294346 - 27294417
Alignment:
Q  140 actccataaggttgctcatttgctcaaaactatgattcctcgccatcaaatagcgtcggagattcaagacat 211  Q
    |||||||||| ||| ||| || |||||||||||||| |||| |||||||||||| |  || |||||||||||    
T  27294346 actccataagattggtcactttctcaaaactatgatccctctccatcaaatagcatatgaaattcaagacat 27294417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University