View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7719_low_39 (Length: 247)

Name: NF7719_low_39
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7719_low_39
NF7719_low_39
[»] chr5 (2 HSPs)
chr5 (13-193)||(26062661-26062840)
chr5 (179-234)||(26062863-26062918)
[»] chr4 (2 HSPs)
chr4 (13-77)||(20565421-20565485)
chr4 (77-141)||(20565667-20565731)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 26062661 - 26062840
Alignment:
Q  13 aataaggacatggtaatcttaaatataacaaggttgtcaaagtaccttatattgtagattatctttgtatatccaaagtagcttcataccgaacacctaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26062661 aataaggacatggtaatcttaaatataacaaggttgtcaaagtaccttatattgtagattatctttgtatatccaaagtagcttcataccgaacacctaa 26062760  T
Q  113 aaataagaatcacataactaaattatgaccctacatatttcnnnnnnnntaaaattatgaccctataaacaaaagtagaat 193  Q
    ||||||||||||||||||||||||||||||||| |||||||         ||||||||||||||||||||||||| |||||    
T  26062761 aaataagaatcacataactaaattatgaccctatatatttcaaaaaaaa-aaaattatgaccctataaacaaaagaagaat 26062840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 26062863 - 26062918
Alignment:
Q  179 aaacaaaagtagaatattgaaactttacattgattttaattgaccctcacgtcttc 234  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26062863 aaacaaaagaagaatattgaaactttacattgattttaattgaccctcacgtcttc 26062918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 20565421 - 20565485
Alignment:
Q  13 aataaggacatggtaatcttaaatataacaaggttgtcaaagtaccttatattgtagattatctt 77  Q
    |||||||||||| | ||| |||||||||||||||||||||  ||||||  | ||| |||||||||    
T  20565421 aataaggacatgatgatcctaaatataacaaggttgtcaagttaccttgaactgtggattatctt 20565485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 20565667 - 20565731
Alignment:
Q  77 ttgtatatccaaagtagcttcataccgaacacctaaaaataagaatcacataactaaattatgac 141  Q
    ||||| ||||||||||||| ||||  ||||||||||| | | ||||||||||| ||| |||||||    
T  20565667 ttgtaaatccaaagtagctccatatggaacacctaaagaaatgaatcacataattaagttatgac 20565731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University