View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_4 (Length: 695)
Name: NF7719_low_4
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 70 - 675
Target Start/End: Original strand, 43378379 - 43378983
Alignment:
| Q |
70 |
cttgtatgtggctctacaaaattacgaccctataattattctacatcggaaaatttcaactgaagcagcacgaatccattttatactctaaatttcatcg |
169 |
Q |
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| T |
43378379 |
cttgtatgtggctctacaaaattacgaccctataattattctacatcggaaaatttcaactgaagcagcacgaatccattttatactctaaatttcatcg |
43378478 |
T |
|
| Q |
170 |
aacaactctatttatgcatatcaatatcatcaacaaacatcacaattccatctaccatcnnnnnnnctc-tcacaattttcaaagaataaagtcgtatca |
268 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
43378479 |
aacaactctatttatgcatattaatatcatcaacaaacatcacaattccatctaccatttttttttttcctcacaattttcaaagaataaagtcgtatca |
43378578 |
T |
|
| Q |
269 |
aataatcaactctatatgcatatctttaatatcggaaaaccactcatcaagagtcttttccgctgcattgccatgttacatcaccgacaacaactacatt |
368 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43378579 |
aataaccaactctatatgcatatctttaatatcggaaaatcact--tcaagagtcttttccgctgcattgccatgttacatcaccgacaacaactacatt |
43378676 |
T |
|
| Q |
369 |
tggacatcatcgtccattccctcatttgtaacaacaactttgttttcatcaatactctacacacaattcgatctcactctcttggtagggatataaccca |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||| |
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| T |
43378677 |
tggacatcatcgtccattccctcatttgtaacaacaactttgttttcatcaatactcgacacacaattcaatctcactttcgtggtagggatataaccca |
43378776 |
T |
|
| Q |
469 |
tatttcttggagtgtttaacctcttccgcacaaacatcacaaccaagaacgaattctcaagagaacaacaacaaacatttgaatcatgaattggtcgttt |
568 |
Q |
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| T |
43378777 |
tatttcttggagtgtttaacctcttccgcacaaacatcacaaccaagaacgaattctcaagtgaacaacaacaaacatttgaatcatgaattggtcgttt |
43378876 |
T |
|
| Q |
569 |
aaaaatgcctccctgtaacgatacttcacgaaaccgaacaacaatgcaaatttaatacgaacaaaaattaactctggaaccttgttctttatggtaagtt |
668 |
Q |
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| T |
43378877 |
aaaaatgcctccccgtgacgatacttcacgaaaccgaacaacaatgcaaatttaatacgaacaaaaattaactctggaaccttgttctttatggtaagtt |
43378976 |
T |
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| Q |
669 |
ttatttt |
675 |
Q |
| |
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|| |||| |
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| T |
43378977 |
ttttttt |
43378983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 433 - 540
Target Start/End: Original strand, 37748400 - 37748507
Alignment:
| Q |
433 |
aattcgatctcactctcttggtagggatataacccatatttcttggagtgtttaacctcttccgcacaaacatcacaaccaagaacgaattctcaagaga |
532 |
Q |
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| T |
37748400 |
aattcgatctatctctcttggtagtgatagaacccctctttcttggattctttagcctctccggcataaacctcacaaccaagactgaattctcaagtga |
37748499 |
T |
|
| Q |
533 |
acaacaac |
540 |
Q |
| |
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| T |
37748500 |
ataacaac |
37748507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 433 - 540
Target Start/End: Complemental strand, 43040437 - 43040331
Alignment:
| Q |
433 |
aattcgatctcactctcttggtagggatataacccatatttcttggagtgtttaacctcttccgcacaaacatcacaaccaagaacgaattctcaagaga |
532 |
Q |
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|||||||||| ||||||||| ||| |||| ||||| | ||||||||| | |||| ||||| | ||| |||| |||||||||||| ||||||||||| || |
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| T |
43040437 |
aattcgatctaactctcttgatagtgatagaacccctctttcttggattcttta-cctctccggcataaacctcacaaccaagactgaattctcaagtga |
43040339 |
T |
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| Q |
533 |
acaacaac |
540 |
Q |
| |
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| T |
43040338 |
ataacaac |
43040331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 5969583 - 5969677
Alignment:
| Q |
128 |
actgaagcagcacgaatccattttatactctaaatttcatcgaacaactctat-ttatgcatatcaatatcatcaacaaacatcacaattccatc |
221 |
Q |
| |
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|||||| |||||| |||||||| | ||||| ||||||||| |||| ||| || |||||||| | | |||||||| ||||||||||||||||||| |
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| T |
5969583 |
actgaaacagcaccgatccatttcacactctgaatttcatcaaacagctccatattatgcatgttactatcatcagcaaacatcacaattccatc |
5969677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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