View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_41 (Length: 246)
Name: NF7719_low_41
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 2391180 - 2390960
Alignment:
| Q |
16 |
agaagcccggcagcaaagccattttggcttcggtttaacggcagaggtaaagtgagaggatggcgaagactcactgatcttgcacctttcacagtaacca |
115 |
Q |
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| T |
2391180 |
agaagcccggcagcaaagccattttggcttcggtttaacggcagaggtaaagtaagaggatggcgaagactcactgatcttgcacctttcacagtaacca |
2391081 |
T |
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| Q |
116 |
ctgcaccatcagccaaaacgactttcttcaacaccccagcatccacatcatgctgcaaataccaaatcaacatcaagtcaatttcacattatccacattc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391080 |
ctgcaccatcagccaaaacgactttcttcaacaccccagcatccacatcatgctgcaaataccaaatcaacatcaagtcaatttcacattatccacattc |
2390981 |
T |
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| Q |
216 |
aactacgccatcttactctat |
236 |
Q |
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|||||| |||||||||||||| |
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| T |
2390980 |
aactacaccatcttactctat |
2390960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 109 - 236
Target Start/End: Original strand, 56190134 - 56190261
Alignment:
| Q |
109 |
gtaaccactgcaccatcagccaaaacgactttcttcaacaccccagcatccacatcatgctgcaaataccaaatcaacatcaagtcaatttcacattatc |
208 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
56190134 |
gtaaccactgcaccatcagccaaaacaactttcttcaacaccccagcatccacatcatgctgcatataccaaaccaacatcaagtcaatttcacattatc |
56190233 |
T |
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| Q |
209 |
cacattcaactacgccatcttactctat |
236 |
Q |
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||||||||||||| |||||||||||||| |
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| T |
56190234 |
cacattcaactacaccatcttactctat |
56190261 |
T |
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