View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_44 (Length: 242)
Name: NF7719_low_44
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_44 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 40958511 - 40958282
Alignment:
| Q |
13 |
catcagaattgtcactccctttgtcttttttcttcatgttgtcatcggtgtcaaacaagtattgaacattctgtaggagtgtctccaaacatttgtcacg |
112 |
Q |
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| T |
40958511 |
catcagaattgtcactccctttgtcttttttcttcatgttgtcatcggtgtcaaacaagtattgaacattctgaaggagtgtctccaaacatttgtcacg |
40958412 |
T |
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| Q |
113 |
atgggcatctcctgttagtgcgttaaatttcactaatacgcgctcatgctctgaggtattagctacacgttttcctgatatttcaggttccagagattgg |
212 |
Q |
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| T |
40958411 |
atgggcatctcctgttagtgcgttaaatttcactaatacacgataatgctctgaggtattagctacacgttttcctggtatttcaggttccagagattgg |
40958312 |
T |
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| Q |
213 |
acactctttcgagatgcttccttctccttt |
242 |
Q |
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| T |
40958311 |
acactctttcgagatgcttccttctccttt |
40958282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 40945474 - 40945300
Alignment:
| Q |
54 |
tcatcggtgtcaaacaagtattgaacattctgtaggagtgtctccaaacatttgtcacgatgggcatctcctgttagtgcgttaaatttcactaatacgc |
153 |
Q |
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| T |
40945474 |
tcatcagtgtcaaacaagtattgaacattttgaagcaacatcgccaaacccttgtcacgatggctatctcctgttaacgcattaaaattcactaatatgc |
40945375 |
T |
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| Q |
154 |
gctcatgctctgaggtattagctacacgttttcctgatatttcaggttccagagattggacactctttcgagatg |
228 |
Q |
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| T |
40945374 |
gctgaggctctgtggtaataactggacaactccctggtgttccaggtttcagagagtggagactctttcgagatg |
40945300 |
T |
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