View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_5 (Length: 687)
Name: NF7719_low_5
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 643; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 13 - 671
Target Start/End: Original strand, 33102350 - 33103008
Alignment:
| Q |
13 |
gagtttcgtggtgctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatg |
112 |
Q |
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| T |
33102350 |
gagtatcgtggtgctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatg |
33102449 |
T |
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| Q |
113 |
ggagagattttcttgagacagatgctgaggttggtgatgatggtaagcttcatgttcatgtcagaaaatcaaacgcttcccggagatcttttatgatgac |
212 |
Q |
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| T |
33102450 |
ggagagattttcttgagacagatgctgaggttggtgatgatggtaagcttcatgttcatgtcagaaaatcaaacgcttcccggagatcttttatgatgac |
33102549 |
T |
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| Q |
213 |
tccgcggccgtcgaatctcaccggagcagagatttatagtttgagttcttcccggaatccgacgccgcgagggtctaattttaatcatacggatttctac |
312 |
Q |
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| T |
33102550 |
tccacggccgtcgaatctcaccggagcagagatttatagtttgagttcttcccggaatccgacgccgcgagggtctaattttaatcatacggatttctac |
33102649 |
T |
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| Q |
313 |
tctatgatgggctatgctccgagacattctaattttggtgctaatgatgtgtattccgttcagtccaattcccgtgggccgactccaagaccgtcaaact |
412 |
Q |
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| T |
33102650 |
tctatgatgggctatgctccgagacattctaattttggtgctaatgatgtgtattccgttcagtccaattcccgtgggccgactccaagaccgtcaaact |
33102749 |
T |
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| Q |
413 |
tcgaagagaaccctgcgccaactgcaacatcggcacagactgttaactctccgaaatttggattttatccggcacaaaatgtgccggcagcttaccctgc |
512 |
Q |
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| T |
33102750 |
tcgaagagaaccctgtgccaactgcaacatcggcacagactgttaactctccgaaatttggattttatccggcacaaaatgtgccggcagcttaccctgc |
33102849 |
T |
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| Q |
513 |
tccaaacccggaattctcttccgggttgagcaagagtgttagtaaaaactctcagcaacatttatcacagcaacagactcagcaaacagttcaagtacaa |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102850 |
tccaaacccggaattctcttccgggttgagcaagagtgttagtaaaaactctcagcaacatttatcacagcaacagactcagcaaacagttcaagtacaa |
33102949 |
T |
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| Q |
613 |
ccacaaacagttactagcaatggctctgctgctgctgctaaaactagccacgatgctaa |
671 |
Q |
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| T |
33102950 |
ccacaaacagttactagcaatggctctgctgctgctgctaaaactagccatgatgctaa |
33103008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 52716666 - 52716731
Alignment:
| Q |
43 |
gaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctctt |
108 |
Q |
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| T |
52716666 |
gaacagtttcctgaaactgcagcttctataacatcattcaaagttgattctgacgttgtttctctt |
52716731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 52711358 - 52711419
Alignment:
| Q |
43 |
gaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttc |
104 |
Q |
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| T |
52711358 |
gaacagtttccagaaactgcagcttctataacatcattcaaagttgattctgatgttgtttc |
52711419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 10838726 - 10838490
Alignment:
| Q |
19 |
cgtggtgctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatgggagag |
118 |
Q |
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| T |
10838726 |
cgtggtgctaagcttttaatcatggagcagtttccagaaaccgcggcttccatcgtttcctttaaggtcgattcggacgttatgtcgttagatggaagag |
10838627 |
T |
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| Q |
119 |
attttcttgagacagatgctgaggttggtgatgatggtaagcttcatgttcatgtcagaaaatcaaacgcttcccggagatcttttatgatg---actcc |
215 |
Q |
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| T |
10838626 |
attttcttgaaactgatgcatcagttggtgatgatgggaagttacatgttactgttaggaagtctaacgcgtcgcggaggtcatttatgatgaatactcc |
10838527 |
T |
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| Q |
216 |
gcggccgtcgaatctcaccggagcagagatttatagt |
252 |
Q |
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| T |
10838526 |
gcgaccgtcaaatttgactggagctgagatttatagt |
10838490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 34971151 - 34971313
Alignment:
| Q |
22 |
ggtgctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatgggagagatt |
121 |
Q |
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||||||| | |||| ||| | |||||||||||||| ||||||| ||||||||| || || || ||||||||||||||| ||||| | ||||| | ||| |
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| T |
34971151 |
ggtgctaggattctcattgttgaacagtttcctgatactgctggttctattatatcattcaaagttgattctgatgttctttctttggatggtaaagagc |
34971250 |
T |
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| Q |
122 |
ttcttgagacagatgctgaggttggtgatgatggtaagcttcatgttcatgtcagaaaatcaa |
184 |
Q |
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||| | || || ||||| |||||||| |||||||| |||||||| | || |||||||||| |
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| T |
34971251 |
cacttcaaactgaagctgaagttggtgaagatggtaaacttcatgtgaaagttagaaaatcaa |
34971313 |
T |
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