View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_6 (Length: 576)
Name: NF7719_low_6
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Complemental strand, 23182927 - 23182380
Alignment:
| Q |
1 |
aacaacaagttcattcaactgtatctaaattgtattgtatggctgcatcatgtgtgtctctgtggagcacaggtttttaatactgtgatttgtgtatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
23182927 |
aacaacaagttcattcaactgtatctaaattgtattgtatggctgcatcatgtgtgtctccgtggagcacaggtttttaatactgtgatttatgtatatt |
23182828 |
T |
|
| Q |
101 |
tctgaaggttattctttctgatgcaaatgttcctggcgaaggggagcataagattacgtcctacgttcgtcttcaaagaaatcttaaaggatatgatccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23182827 |
tctgaaggttattctttctgatgcaaatgttcctggcgaaggggagcataagattacgtcctacattcgtcttcaaagaaatcttaaaggatatgatccc |
23182728 |
T |
|
| Q |
201 |
aatacacggcattgcctatatggtttggtatgtatcttcctatattttctatgcattatttaatcatcgacttgatcaacttgttcatatcattttggtg |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23182727 |
aatacacagcattgcctatatggtttggtatgtatcttcctatattttctatgcattatttaaccatcgacttgatcaacttgttcatatcattttggtg |
23182628 |
T |
|
| Q |
301 |
tcttatggcaggatgctgatttgatcatgttgggtctggctacccatgaaatccatttttcaattcttagagaggtttgtgcgtactgaaattttctttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23182627 |
tcttatggcaggatgctgatttgatcatgttgggtctggctacccatgaaatccatttttcaattcttagagaggtttgtgcgtactgaaattttctttt |
23182528 |
T |
|
| Q |
401 |
gcgtctctgaatttaatagtaaaataactacataatcttcattataaaagaatgatcgtttattatgatcgttggttattgcaggttgtgtttactccta |
500 |
Q |
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| T |
23182527 |
gcgtctctgaatttaatagtaaaatcactacataatcttcattataaaagaatgat-------------cgttggttattgcaggttgtgtttactcctg |
23182441 |
T |
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| Q |
501 |
gacaagacaaatgcttcctgtgtggtcagatgggtcatatggctgcagagtgtgaaggaaa |
561 |
Q |
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| T |
23182440 |
gacaagacaaatgcttcctgtgtggtcagatgggtcatatggctgcagagtgtgaaggaaa |
23182380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Complemental strand, 23895020 - 23894473
Alignment:
| Q |
1 |
aacaacaagttcattcaactgtatctaaattgtattgtatggctgcatcatgtgtgtctctgtggagcacaggtttttaatactgtgatttgtgtatatt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||| || ||||||||| ||||||| |||||||||||||||||||||| |||||||| |
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| T |
23895020 |
aacaacaagttcatgcaactgtatctaaattttattgtatggctgcagcacgtgtgtctcagtggagctcaggtttttaatactgtgatttatgtatatt |
23894921 |
T |
|
| Q |
101 |
tctgaaggttattctttctgatgcaaatgttcctggcgaaggggagcataagattacgtcctacgttcgtcttcaaagaaatcttaaaggatatgatccc |
200 |
Q |
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| T |
23894920 |
tctgaaggttattctttctgatgcaaatgttcccggcgaaggggagcataagattatgtcctacgttcgccttcaaagaaatcttgaaggatatgatccc |
23894821 |
T |
|
| Q |
201 |
aatacacggcattgcctatatggtttggtatgtatcttcctatattttctatgcattatttaatcatcgacttgatcaacttgttcatatcattttggtg |
300 |
Q |
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| T |
23894820 |
aatacacggcattgcatgtatggtttggtatgtatcttcctatattttctatgcattattcaatcatcgacttgatcaacttgttcatatcattttggtg |
23894721 |
T |
|
| Q |
301 |
tcttatggcaggatgctgatttgatcatgttgggtctggctacccatgaaatccatttttcaattcttagagaggtttgtgcgtactgaaattttctttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23894720 |
tcttatggcaggatgctgatttgatcatgttgggtctggctacccatgaaatccatttttcaattcttagagaggtttgtgcgtactgaaattttctttt |
23894621 |
T |
|
| Q |
401 |
gcgtctctgaatttaatagtaaaataactacataatcttcattataaaagaatgatcgtttattatgatcgttggttattgcaggttgtgtttactccta |
500 |
Q |
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| T |
23894620 |
g-gtctctgaatata--tgcatattaattacataatgttcattataaaagaatgatcgttt-------------gttattgcaggttgtgtttactcctg |
23894537 |
T |
|
| Q |
501 |
g---acaagacaaatgcttcctgtgtggtcagatgggtcatatggctgcagagtgtgaaggaaa |
561 |
Q |
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| T |
23894536 |
gacaacaagacaaatgcttcctgtgtggtcagatgggtcatatggctgcggagtgtgaaggaaa |
23894473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 31295344 - 31295399
Alignment:
| Q |
78 |
taatactgtgatttgtgtatatttctgaaggttattctttctgatgcaaatgttcc |
133 |
Q |
| |
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|||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
31295344 |
taatactgtgatttttgtgtatatctgaaggttattctttctgatgcaaatgttcc |
31295399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 34 - 237
Target Start/End: Original strand, 7863331 - 7863528
Alignment:
| Q |
34 |
attgtatggctgcatcatgtgtgtctctgtggagcacaggtttttaatactgtgatttgtgtatatttctgaaggttattctttctgatgcaaatgttcc |
133 |
Q |
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|||||||||||||| |||||||||| ||||||| ||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
7863331 |
attgtatggctgcagtatgtgtgtctttgtggag------tttataatactgtgatttttgtgtatatctgaaggttattctttctgatgcaaatgttcc |
7863424 |
T |
|
| Q |
134 |
tggcgaaggggagcataagattacgtcctacgttcgtcttcaaagaaatcttaaaggatatgatcccaatacacggcattgcctatatggtttggtatgt |
233 |
Q |
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|| ||||||||||||||||||| |||||| | || ||||||||||||||| |||||| |||| |||||||| |||||||| ||||||||||||| | |
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| T |
7863425 |
cggtgaaggggagcataagattatgtcctatatccgccttcaaagaaatcttgaaggattcaatccgaatacacgacattgcctgtatggtttggtatat |
7863524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 269 - 381
Target Start/End: Original strand, 7863607 - 7863717
Alignment:
| Q |
269 |
gacttgatcaacttgttcatatcattttggtgtcttatggcaggatgctgatttgatcatgttgggtctggctacccatgaaatccatttttcaattctt |
368 |
Q |
| |
|
|||||||||||||||||||||||||||| | | || || ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7863607 |
gacttgatcaacttgttcatatcatttt--tttattttgacaggatgctgatttgattatgttgggtctggctacccatgaagtccatttttcaattctt |
7863704 |
T |
|
| Q |
369 |
agagaggtttgtg |
381 |
Q |
| |
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| T |
7863705 |
agagaggtttgtg |
7863717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 482 - 561
Target Start/End: Original strand, 7863859 - 7863938
Alignment:
| Q |
482 |
caggttgtgtttactcctagacaagacaaatgcttcctgtgtggtcagatgggtcatatggctgcagagtgtgaaggaaa |
561 |
Q |
| |
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|||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| |
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| T |
7863859 |
caggttgtatttactcctggtcaagacaaatgcttcctgtgtggtcaaatgggtcatatggctgcgaactgtgaaggaaa |
7863938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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