View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_7 (Length: 576)
Name: NF7719_low_7
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 64 - 565
Target Start/End: Complemental strand, 39964886 - 39964385
Alignment:
| Q |
64 |
caaactttcttcaactaaactaattgactagtgttacttagttgggaggatcttaagttaaggttaaattaatttagctgactagttgtaacatgaaaaa |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39964886 |
caaactttcttcaactaaactaattgactagtgttacttagttgggaggatcttaagttaaggttaaattaatttagctgactagttgtaacatgaaaaa |
39964787 |
T |
|
| Q |
164 |
tagtgtagttaggttaacaaaaggataaacaagaggccaaatttatgacaaccaataattgacatccaagactaaaaaacaatactactagaacacttat |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39964786 |
tagtgtagttaggttaacaaaaggataaacaagaggccaaatttatgacaaccaataattgacatccaagactaaaaaacaatactactagaacacttat |
39964687 |
T |
|
| Q |
264 |
tgaaatctttatggttatcttttatttgtcgttataatttggaaatttcgccttcatgtgagtagagtggattgtctctgttcctcggcatcaggcataa |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39964686 |
tgaaatctttatggttatcttttatttgtcgttataatttggaaatttcgccttcatgtgagtagagtagattgtctctgttcctcggcatcaggcataa |
39964587 |
T |
|
| Q |
364 |
ggttagaaatagaaaccaaattttgtttgacttattgaaagattagaacaatggcctaattgtaacaacgcaaaaagaccaagcctaaaaggtaacattt |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39964586 |
ggttagaaatagaaaccaaattttgtttgacttattgaaagattagaacaatggcctaattgtaacaacgcaaaaagaccaagcctaaaaggtaacattt |
39964487 |
T |
|
| Q |
464 |
gaaagctctatgctaccatcccaatatgcactttacactaactgaatcacatcttaatttttcttcctaataggaaatgtttcttgttttcttcttcttc |
563 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39964486 |
gaaagctctatgctaccatcccaatatgcactttacactaactgaatcacatcttaatttttcttcctaataggaaatgtttcttgttttcttcttcttc |
39964387 |
T |
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| Q |
564 |
tt |
565 |
Q |
| |
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|| |
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| T |
39964386 |
tt |
39964385 |
T |
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