View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_low_8 (Length: 548)
Name: NF7719_low_8
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 19 - 546
Target Start/End: Original strand, 38935628 - 38936155
Alignment:
| Q |
19 |
attccttgcacaattttcacccttgcactccaacttagctccaattttccttctcctccatacaacacttttcccaagcttcctttctctacatgttcat |
118 |
Q |
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| T |
38935628 |
attccttgcacaatttccacccttgcactccaacttagctccaattttccttctcctccatacaacacttttcccaagcttcctttctctacatgttcat |
38935727 |
T |
|
| Q |
119 |
aaaccaggaacatttgtctcctcatagaacagaaaccataaagctttattatattccggtgcctcacttctgttagcgttcttatctcattcatgaagct |
218 |
Q |
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| T |
38935728 |
aaaccaggaacatttgtctcctcatagaacagaaaccataaagctttattatattccggtgcctcacttctgttagcgttcttatctcattcatgaagct |
38935827 |
T |
|
| Q |
219 |
catgcggttcacttctggaatgtcatcagagtctgatatattgagtctttttacagcaacaacttgacctgtagagaattccgctctataaacacttcca |
318 |
Q |
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| T |
38935828 |
catgcggttcacttctggaatgtcatcagagtctgatatattgagtctttttacagcaacaacttgacctgtagagaattccgctctataaacacttcca |
38935927 |
T |
|
| Q |
319 |
aatcctcctttcccaatgcaatatttttcattgaaatcattggttgctttaacaagatcagaaaatgtgaatttcccatctcttccccatagcatgcaaa |
418 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38935928 |
aatcctcctttcccaatgcaatatttttcgttgaaatcattggttgctttaacaagatcagaaaatgtgaatttcccatctcttccccataccatgcaaa |
38936027 |
T |
|
| Q |
419 |
tagattgatcattatcttcaatgctttgggattcttcactaagttttttagctttcctttgaaatagtagaattccaacaccaatcatccctacaaatag |
518 |
Q |
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| T |
38936028 |
tagattgatcattatcttcaatgctttgggattcttcactaagttttttagctttcctttgaaatagtagaattccaacaccaatcatccctacaaatag |
38936127 |
T |
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| Q |
519 |
tactccaccaaatgatatcgtaacacca |
546 |
Q |
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| T |
38936128 |
tactccaccaaatgatatcgtaacacca |
38936155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 411 - 546
Target Start/End: Complemental strand, 39306932 - 39306797
Alignment:
| Q |
411 |
catgcaaatagattgatcattatcttcaatgctttgggattcttcactaagttttttagctttcctttgaaatagtagaattccaacaccaatcatccct |
510 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||| |||| |||||| || |||||| ||| |||||||||| |
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| T |
39306932 |
catgcaaatagattgatcattatcttcaatgtttttggattcttcaccgtgttttttggcttgccttcgaaatattaagattccagcacaaatcatccct |
39306833 |
T |
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| Q |
511 |
acaaatagtactccaccaaatgatatcgtaacacca |
546 |
Q |
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| T |
39306832 |
ataaatagtactccaccaactgatatagtaacacca |
39306797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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