View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7719_low_9 (Length: 520)

Name: NF7719_low_9
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7719_low_9
NF7719_low_9
[»] chr3 (6 HSPs)
chr3 (10-392)||(3175970-3176352)
chr3 (301-392)||(3175784-3175875)
chr3 (302-392)||(3175601-3175691)
chr3 (274-368)||(3175904-3175998)
chr3 (274-350)||(3175736-3175812)
chr3 (274-322)||(3175581-3175629)
[»] chr1 (4 HSPs)
chr1 (24-404)||(24541150-24541537)
chr1 (301-392)||(24540979-24541070)
chr1 (274-348)||(24540933-24541007)
chr1 (274-350)||(24541114-24541190)
[»] chr5 (4 HSPs)
chr5 (34-392)||(20963741-20964091)
chr5 (301-386)||(20964186-20964271)
chr5 (292-368)||(20964081-20964157)
chr5 (274-348)||(20964249-20964323)
[»] chr2 (5 HSPs)
chr2 (18-281)||(41525197-41525460)
chr2 (301-392)||(41524567-41524658)
chr2 (301-392)||(41524911-41525002)
chr2 (301-392)||(41524737-41524822)
chr2 (272-350)||(41524863-41524941)
[»] chr6 (2 HSPs)
chr6 (134-248)||(14675143-14675257)
chr6 (310-365)||(14675026-14675081)
[»] chr4 (1 HSPs)
chr4 (303-362)||(16591879-16591938)


Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 392
Target Start/End: Complemental strand, 3176352 - 3175970
Alignment:
Q  10 tggacatcagctcttataaatagatcaactatcacactctctcaacacaccaacatcactcatctccctctctctcaaggttaccttctcttaaaccaaa 109  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||    
T  3176352 tggacattagctcttataaatagatcaactctcacactctctcaacacaccaacatcactcaactccctctctttcaaggttacattctcttaaaccaaa 3176253  T
Q  110 aaatggccaaaactttagtattagtttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaag 209  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3176252 aaatggccaaaactttagtattggtttttctctttctccaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaag 3176153  T
Q  210 tccacttcatcccccaactaagtcaccgattcataaaccattagctagcccccctcaccacaaccactcaccatcacatgcaccttctcatgttcacact 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3176152 tccacttcatcccccaactaagtcaccgattcataaaccattagctagcccacctcaccacaaccactcaccatcacatgcaccttctcatgttcacact 3176053  T
Q  310 cctttacatcctccccaccctgctaaacccccgacccatcaccaccaccaacatcactcaccatcccctgctccttctcatgt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  3176052 cctttacatcctccccaccctgctaaacccccgacccatcaccgccaccaacatcactcaccatcccttgctccttctcatgt 3175970  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 3175875 - 3175784
Alignment:
Q  301 gttcacactcctttacatcctccccaccctgctaaacccccgacccatcaccaccaccaacatcactcaccatcccctgctccttctcatgt 392  Q
    ||||||||||||||||||||||| |||||||| ||||| || || |||||||||||||||||||||||||||||||| || ||||| |||||    
T  3175875 gttcacactcctttacatcctcctcaccctgccaaacctccaactcatcaccaccaccaacatcactcaccatcccccgccccttcccatgt 3175784  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 3175691 - 3175601
Alignment:
Q  302 ttcacactcctttacatcctccccaccctgctaaacccccgacccatcaccaccaccaacatcactcaccatcccctgctccttctcatgt 392  Q
    |||||||||||||||||||||| |||||||| ||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||||    
T  3175691 ttcacactcctttacatcctcctcaccctgccaaacctccaacacatcaccaccaccaacatcactcaccttcccctgccccttcccatgt 3175601  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 368
Target Start/End: Complemental strand, 3175998 - 3175904
Alignment:
Q  274 cactcaccatcacatgcaccttctcatgttcacactcctttacatcctccccaccctgctaaacccccgacccatcaccaccaccaacatcactc 368  Q
    ||||||||||| | ||| |||||||||||||||||||||||||||||||  || ||||| ||||| || |||||||| || || || ||||||||    
T  3175998 cactcaccatcccttgctccttctcatgttcacactcctttacatcctcgtcatcctgcaaaacctccaacccatcatcatcatcatcatcactc 3175904  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 3175812 - 3175736
Alignment:
Q  274 cactcaccatcacatgcaccttctcatgttcacactcctttacatcctccccaccctgctaaacccccgacccatca 350  Q
    ||||||||||| |  || ||||| |||||||||||||||||||||| ||  |||||||| |||||||| ||||||||    
T  3175812 cactcaccatcccccgccccttcccatgttcacactcctttacatcatcgtcaccctgcaaaacccccaacccatca 3175736  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 3175629 - 3175581
Alignment:
Q  274 cactcaccatcacatgcaccttctcatgttcacactcctttacatcctc 322  Q
    |||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  3175629 cactcaccttcccctgccccttcccatgttcacactcctttacatcctc 3175581  T

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Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 24 - 404
Target Start/End: Complemental strand, 24541537 - 24541150
Alignment:
Q  24 tataaatagatcaactatcacactctctcaacacaccaacatcactcatctccctctctctcaaggttaccttctcttaa-accaaaaaatggccaaaac 122  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||    
T  24541537 tataaatagatcaactctcacactctctcaacacatcaacatcactcatctccctctctttcaaggttaccttctcttaacacaaaaaaatggcgaaaac 24541438  T
Q  123 tttagtattagtttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaagtccacttcatccc 222  Q
    | |  ||||  |||||||||||||| ||||||||||||||||||| || |||||| ||||||||||| |||||||||||||| ||| ||||| |||| ||    
T  24541437 tctcttattgttttttctctttctccaaataacctctttcatagcatttgctgaaaagctagaaactcttcatcacaaaccagcaactccacatcattcc 24541338  T
Q  223 ccaactaagtcaccgattcataaaccattagctagcccccctcaccacaaccactcaccatcacatgcaccttctcatgttcacactcctttacatcctc 322  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24541337 ccaactaagtcacctgttcataaaccattagctagcccacctcaccacaaccactcaccatcccatgcaccttctcatgttcacactcctttacatcctc 24541238  T
Q  323 cccaccctgctaaacccccgacccatcaccaccaccaac------atcactcaccatcccctgctccttctcatgtccaccccccttt 404  Q
    | |||||||||||||||||||||||||||||||||||||      ||||||||||||||||| | ||||| ||||| ||||| |||||    
T  24541237 ctcaccctgctaaacccccgacccatcaccaccaccaacatcaacatcactcaccatcccctacgccttcccatgttcaccctccttt 24541150  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 24541070 - 24540979
Alignment:
Q  301 gttcacactcctttacatcctccccaccctgctaaacccccgacccatcaccaccaccaacatcactcaccatcccctgctccttctcatgt 392  Q
    ||||||||||||||||||||||| |||||||| ||||| || |||||||||| ||||||||||||||||||||||||||| ||||| |||||    
T  24541070 gttcacactcctttacatcctcctcaccctgccaaacctccaacccatcaccgccaccaacatcactcaccatcccctgccccttcccatgt 24540979  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 348
Target Start/End: Complemental strand, 24541007 - 24540933
Alignment:
Q  274 cactcaccatcacatgcaccttctcatgttcacactcctttacatcctccccaccctgctaaacccccgacccat 348  Q
    ||||||||||| | ||| ||||| |||||||||||||||||||||||||  |||||||| |||||||| ||||||    
T  24541007 cactcaccatcccctgccccttcccatgttcacactcctttacatcctcgtcaccctgcaaaaccccccacccat 24540933  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 24541190 - 24541114
Alignment:
Q  274 cactcaccatcacatgcaccttctcatgttcacactcctttacatcctccccaccctgctaaacccccgacccatca 350  Q
    ||||||||||| | | | ||||| ||||||||| |||||||||||||||  ||||| || |||||||| || |||||    
T  24541190 cactcaccatcccctacgccttcccatgttcaccctcctttacatcctcgtcacccagcaaaacccccaactcatca 24541114  T

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Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 34 - 392
Target Start/End: Original strand, 20963741 - 20964091
Alignment:
Q  34 tcaactatcacactctctcaacacaccaacatcactcatctccctctctctcaaggttaccttctcttaaaccaaaa--aatggccaaaactttagtatt 131  Q
    |||||| ||||||||||||||||||||||||||| || ||||||||||| |||||||| | |||||||||  |||||  ||||||||||||| | |||||    
T  20963741 tcaactctcacactctctcaacacaccaacatcaatcctctccctctctttcaaggtt-ctttctcttaacacaaaaaaaatggccaaaactctggtatt 20963839  T
Q  132 agtttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaagtccacttcatcccccaactaag 231  Q
      |||||||||||||| ||||||||||||||||||| ||  ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  20963840 gttttttctctttctccaaataacctctttcatagcatttactgaagagctagaaacttttcataacaaaccagcaactccacttcatcccccaactaag 20963939  T
Q  232 tcaccgattcataaaccattagctagcccccctcaccacaaccactcaccatcacatgcaccttctcatgttcacactcctttacatcctccccaccctg 331  Q
    |||||| |||||||||||               |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  20963940 tcaccggttcataaacca---------------caccacaaccactcaccatcccatgcaccttctcatgttcacactcctttacatcctcctcaccctg 20964024  T
Q  332 ctaaacccccgacccatcaccaccac------caacatcactcaccatcccctgctccttctcatgt 392  Q
    ||||||||||||||||||||||||||      |||||||| |||||||||||| ||||||| |||||    
T  20964025 ctaaacccccgacccatcaccaccaccagcatcaacatcattcaccatcccctactccttcccatgt 20964091  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 301 - 386
Target Start/End: Original strand, 20964186 - 20964271
Alignment:
Q  301 gttcacactcctttacatcctccccaccctgctaaacccccgacccatcaccaccaccaacatcactcaccatcccctgctccttc 386  Q
    ||||||||||||||||||| ||| || ||||| ||||| || ||||||||||||||||||||||||||||||||||| || |||||    
T  20964186 gttcacactcctttacatcatcctcatcctgccaaacctccaacccatcaccaccaccaacatcactcaccatcccccgccccttc 20964271  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 20964081 - 20964157
Alignment:
Q  292 ccttctcatgttcacactcctttacatcctccccaccctgctaaacccccgacccatcaccaccaccaacatcactc 368  Q
    ||||| ||||||||||||||| |||||||||  |||||||| |||||||| |||||||| || || || ||||||||    
T  20964081 ccttcccatgttcacactcctatacatcctcgtcaccctgcaaaacccccaacccatcatcatcatcatcatcactc 20964157  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 20964249 - 20964323
Alignment:
Q  274 cactcaccatcacatgcaccttctcatgttcacactcctttacatcctccccaccctgctaaacccccgacccat 348  Q
    ||||||||||| |  || ||||| ||| |||||||||||||||||||||  |||||||| |||||||| ||||||    
T  20964249 cactcaccatcccccgccccttcacattttcacactcctttacatcctcgtcaccctgcaaaaccccccacccat 20964323  T

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Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 41525460 - 41525197
Alignment:
Q  18 agctcttataaatagatcaactatcacactctctcaacacaccaacatcactcatctccctctctctcaaggttaccttctcttaaaccaaaaaatggcc 117  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||||||| |||  ||||||||||| |||| ||| | |||||||||| ||||||||||||    
T  41525460 agctcctataaatagatcaactctcacactctctcaacccaccaacattacttctctccctctctttcaaagttgcattctcttaaaacaaaaaatggcc 41525361  T
Q  118 aaaactttagtatt-agtttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaagtccactt 216  Q
    |||||| |||||||   |||||||||| ||| |||||||||| |||||||| || |||||||||||||||||| |||||||||||||| ||| |||||||    
T  41525360 aaaactctagtattgtttttttctcttactccaaataacctccttcatagcatttgctgaagagctagaaactcttcatcacaaaccagcaactccactt 41525261  T
Q  217 catcccccaactaagtcaccgattcataaaccattagctagcccccctcaccacaaccactcacc 281  Q
    ||| ||||||||||||||||| ||||||||||||| |||| ||| |||||||||| |||||||||    
T  41525260 cat-ccccaactaagtcaccggttcataaaccattggctaacccacctcaccacagccactcacc 41525197  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 41524658 - 41524567
Alignment:
Q  301 gttcacactcctttacatcctccccaccctgctaaacccccgacccatcaccaccaccaacatcactcaccatcccctgctccttctcatgt 392  Q
    |||||||||||||||||||||||  ||||| | ||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  41524658 gttcacactcctttacatcctccttaccctaccaaacctccaacccatcaccaccaccaacaccactcaccatcccctgctccttcccatgt 41524567  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 41525002 - 41524911
Alignment:
Q  301 gttcacactcctttacatcctccccaccctgctaaacccccgacccatcaccaccaccaacatcactcaccatcccctgctccttctcatgt 392  Q
    ||||||||||||||||||||||   ||| | | ||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  41525002 gttcacactcctttacatcctctttaccataccaaacctccaacccatcaccaccaccaacaccactcaccatcccctgctccttcccatgt 41524911  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 41524822 - 41524737
Alignment:
Q  301 gttcacactcctttacatcctccccaccctgctaaacccccgacccatcaccaccaccaacatcactcaccatcccctgctccttctcatgt 392  Q
    |||||||||||||||||||||||  ||||| | ||||| || |||||||||||||||      ||||||||||||||||||||||| |||||    
T  41524822 gttcacactcctttacatcctccttaccctaccaaacctccaacccatcaccaccac------cactcaccatcccctgctccttcccatgt 41524737  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 41524941 - 41524863
Alignment:
Q  272 accactcaccatcacatgcaccttctcatgttcacactcctttacatcctccccaccctgctaaacccccgacccatca 350  Q
    ||||||||||||| | ||| ||||| |||||||| ||||||||| ||||||  |||||||| |||||||| ||||||||    
T  41524941 accactcaccatcccctgctccttcccatgttcatactcctttatatcctcgtcaccctgcaaaacccccaacccatca 41524863  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 14675257 - 14675143
Alignment:
Q  134 tttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaagtccacttcatcccccaactaagtc 233  Q
    |||||||||| ||| |||||||||||||| | |  || || |||||||| |||||| |||||||||||||| |||  ||||||||||||||||| |||||    
T  14675257 tttttctcttactccaaataacctctttcgttgtgtttgcggaagagcttgaaactcttcatcacaaaccaacaacaccacttcatcccccaacaaagtc 14675158  T
Q  234 accgattcataaacc 248  Q
    |||| | ||||||||    
T  14675157 accggtgcataaacc 14675143  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 14675081 - 14675026
Alignment:
Q  310 cctttacatcctccccaccctgctaaacccccgacccatcaccaccaccaacatca 365  Q
    ||||||| ||| || ||||||||||||||||  |||||||||||||||||||||||    
T  14675081 cctttacctccacctcaccctgctaaacccctaacccatcaccaccaccaacatca 14675026  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 16591879 - 16591938
Alignment:
Q  303 tcacactcctttacatcctccccaccctgctaaacccccgacccatcaccaccaccaaca 362  Q
    ||||||||||||||| ||| | |||||||||||||| || |||| |||||||||||||||    
T  16591879 tcacactcctttacacccttctcaccctgctaaacctccaacccgtcaccaccaccaaca 16591938  T

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