View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7720_high_1 (Length: 650)
Name: NF7720_high_1
Description: NF7720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7720_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 24 - 635
Target Start/End: Complemental strand, 42942190 - 42941582
Alignment:
| Q |
24 |
ggttgaaggtgatatagcccttgagccagcaagataccatttcttaatagtctctactacattggcattctctattacatactttgagtcttcttttcct |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42942190 |
ggttgaaggtgatatagcccttgagccagcaagataccatttcttaatagtctctactacattggcattctctattacatactttgagtcttcttttcct |
42942091 |
T |
|
| Q |
124 |
tccaaagataccactatctgtattacaacaaacaatcatcacattagtcaacttaaatgcaatatttgttaatgttagttgaagttggttatgtcatcta |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42942090 |
tccaaagataccactatctgtattacaacaaacaatcatcacattagtcaacttaaatgcaatatttgttaatgttagttgaagttggttatgtcatcga |
42941991 |
T |
|
| Q |
224 |
gatgtcaattcaattgttaagagtttgattttgtaaccagatgaaattcaaaactcatatgtagcagctgtaaatgacatgacgattaatgtcattgttg |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42941990 |
gatgtcaattcaattgttaagagtttgattttgtaaccggatgaaattcaaaactcatatgtagcagttgtaaatgacatgacgattaatgtcattgttg |
42941891 |
T |
|
| Q |
324 |
ttaataataagttgacctaaaatcaacctaaaatgaataggatcaattaaggtagccaatgcctaatgctgcttgctattattttacctcagcagttgga |
423 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
42941890 |
ttaataataagttgacctaaaatcaacttaaaatgaataggatcaattaaggtagccagtgcctaatgctgcttgc---tactttacctcagcagttgga |
42941794 |
T |
|
| Q |
424 |
gagtttgctgggaaatgatatgtgatgactgaatgtttcttgaagtacttagactggaaaaattcaattactttttccaaagcttcttcttcttcatcct |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42941793 |
gagtttgctgggaaatgatatgtgatgactgaatgtttcttgaagtacttagactggaaaaattcaattactttttccaaagcttcttcttcttcatcct |
42941694 |
T |
|
| Q |
524 |
catatttgtcatcggctgccaaacggtccctaacagcagtctcaatctgaacaccatactgtgcacccttaatctctttaatcacaacaagtctaattgc |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42941693 |
catatttgtcatcggctgccaaacggtccctaacagcagtctcaatctgaacaccatactgtgcacccttaatctctttaatcacaacaagtctaattgc |
42941594 |
T |
|
| Q |
624 |
cttctccacagg |
635 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42941593 |
cttctccacagg |
42941582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University