View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7720_high_2 (Length: 456)

Name: NF7720_high_2
Description: NF7720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7720_high_2
NF7720_high_2
[»] scaffold0002 (5 HSPs)
scaffold0002 (252-453)||(409987-410188)
scaffold0002 (84-159)||(409820-409895)
scaffold0002 (1-56)||(409769-409824)
scaffold0002 (320-417)||(425667-425764)
scaffold0002 (81-159)||(408100-408185)


Alignment Details
Target: scaffold0002 (Bit Score: 170; Significance: 5e-91; HSPs: 5)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 252 - 453
Target Start/End: Original strand, 409987 - 410188
Alignment:
Q  252 tttatgatatagtaaaacttttaatctaattgtgtttcaatagattttatgacataacagtaattgatagagtaaatatggttggaatattgcacaagtt 351  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  409987 tttatgatatagtaaaacttttactctaattgtgtttcaatagattttatgacataaaagtaattgatagagtaaatatggctggaatattgcacaagtt 410086  T
Q  352 gtataaaacttgtgcaaacaaatttttaaccggtgtggagctaaattcaccgagaggagggatttgaccagaagtatgaaaacagagaacaaaagagtta 451  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  410087 gtataaaacttgtggaaacaaatttttaaccggtgtggagccaaattcaccgagatgagggatttgaccagaagtatgaaaacaaagaacgaaagagtta 410186  T
Q  452 tt 453  Q
    ||    
T  410187 tt 410188  T

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Target: scaffold0002; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 409820 - 409895
Alignment:
Q  84 aatttcaattttcaacctcaagggaaaaactttaaattccatataagacggttgtaaaatattcattgatgtttcc 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  409820 aatttcaattttcaacctcaagggaaaaactttaaattccatataagacggttgtaaaatattcattgatgtttcc 409895  T

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Target: scaffold0002; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 409769 - 409824
Alignment:
Q  1 tttctttggaagtgggtttggtgtaggtgaacaatgttaaaatcgcataaaaattt 56  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  409769 tttctttggaagtgggtttggtttaggtgaacaatgttaaaatcgcataaaaattt 409824  T

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Target: scaffold0002; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 417
Target Start/End: Original strand, 425667 - 425764
Alignment:
Q  320 agagtaaatatggttggaatattgcacaagttgtataaaacttgtgcaaacaaatttttaaccggtgtggagctaaattcaccgagaggagggatttg 417  Q
    ||||||||||| | |||||||| |||| ||||| |||||  || ||||||||  |||||||||| || ||||| ||||| |||| |||||||||||||    
T  425667 agagtaaatatagctggaatatcgcacgagttggataaagtttatgcaaacagttttttaaccgctgcggagcaaaattgaccgggaggagggatttg 425764  T

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Target: scaffold0002; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 408100 - 408185
Alignment:
Q  81 aacaatttcaattttcaacctcaagggaaaaactt-------taaattccatataagacggttgtaaaatattcattgatgtttcc 159  Q
    |||||||||| ||||||||||||||| ||||| ||       |||||||||||||||||| ||||||| |||||||| ||||||||    
T  408100 aacaatttcacttttcaacctcaaggaaaaaatttaaatgtttaaattccatataagacgtttgtaaactattcatttatgtttcc 408185  T

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