View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7720_high_5 (Length: 339)
Name: NF7720_high_5
Description: NF7720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7720_high_5 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 339
Target Start/End: Original strand, 59886 - 60218
Alignment:
| Q |
7 |
acaagcgtgccaattaaacccaatcatacgataataatatcatgaaatgattaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggc |
106 |
Q |
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| T |
59886 |
acaagcgtgccaattaaacccaatcatacgataataatatcatgaaatgattaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggc |
59985 |
T |
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| Q |
107 |
cacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaagaggagcttctgttaagagaactgga |
206 |
Q |
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| T |
59986 |
cacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaagaggagcttctgttaagagaactgga |
60085 |
T |
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| Q |
207 |
tgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgctaacaataccatgctcaattgggtact |
306 |
Q |
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| T |
60086 |
tgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgctaacaataccatgctcaattgggtact |
60185 |
T |
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| Q |
307 |
tgagagtgaggataccacgtttagattgtgcct |
339 |
Q |
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| T |
60186 |
tgagagtgaggataccacgtttagattgtgcct |
60218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 57 - 313
Target Start/End: Complemental strand, 8689063 - 8688807
Alignment:
| Q |
57 |
ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatct |
156 |
Q |
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| T |
8689063 |
ttaccggtggtacgaccactggcgtacagtgaaagaacggcctgaatagcaacatacatagcaggggtattaaaagtctcaaacatgatttgagtcatct |
8688964 |
T |
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| Q |
157 |
tctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaat |
256 |
Q |
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| T |
8688963 |
tctcacgattggccttagggttgagaggagcctcagttaaaagcactgggtgttcttctggggcgacacgaagctcattgtagaaggtgtgatgccaaat |
8688864 |
T |
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| Q |
257 |
cttttccatgtcatcccaattgctaacaataccatgctcaattgggtacttgagagt |
313 |
Q |
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| T |
8688863 |
cttttccatgtcatcccagttgctaacgattccatgttcaatggggtatttaagagt |
8688807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 57 - 304
Target Start/End: Original strand, 37051120 - 37051367
Alignment:
| Q |
57 |
ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatct |
156 |
Q |
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||||| |||||||||||||| || || || ||||| || || ||||| || |||||||||||||| | |||||| |||||||||||||| || ||||| | |
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| T |
37051120 |
ttaccagttgtacgaccactcgcataaagggaaagcacagcttgaatagcaacatacatagcaggagtattgaatgtctcaaacatgatctgagtcattt |
37051219 |
T |
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| Q |
157 |
tctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaat |
256 |
Q |
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| T |
37051220 |
tctcacgattagccttaggattaagaggtgcttcagtaagaaggacagggtgttcttcaggagcaacacgaagttcattgtagaaagtatgatgccagat |
37051319 |
T |
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| Q |
257 |
cttttccatgtcatcccaattgctaacaataccatgctcaattgggta |
304 |
Q |
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| T |
37051320 |
cttctccatatcatcccaattactaacaatcccatgctcaattgggta |
37051367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 57 - 313
Target Start/End: Complemental strand, 67409 - 67153
Alignment:
| Q |
57 |
ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatct |
156 |
Q |
| |
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|||||||||||||| ||||| || || || ||||| || ||||||||||| ||||||||||| || |||||||| ||||||||||| || || ||||| | |
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| T |
67409 |
ttaccggttgtacggccactagcataaagcgaaagcacagcctgaatggcaacatacatagctggagcattgaaggtctcaaacataatctgagtcattt |
67310 |
T |
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| Q |
157 |
tctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaat |
256 |
Q |
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| T |
67309 |
tctcacgattagccttaggattaagtggtgcttcagtgagaagaacaggatgttcttcaggagccacacgaagctcattgtagaaagtgtgatgccagat |
67210 |
T |
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| Q |
257 |
cttttccatgtcatcccaattgctaacaataccatgctcaattgggtacttgagagt |
313 |
Q |
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| T |
67209 |
cttttccatatcatcccagttactaacaattccatgctcaattgggtactttagagt |
67153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 59 - 301
Target Start/End: Complemental strand, 41387870 - 41387628
Alignment:
| Q |
59 |
accggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttc |
158 |
Q |
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| T |
41387870 |
accggttgttcgaccactggcatagagcgatagaacggcctgaatagcaacatacatagcaggtgtgttgaatgtctcaaacataatttgtgtcattttc |
41387771 |
T |
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| Q |
159 |
tcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatct |
258 |
Q |
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| T |
41387770 |
tcacgattagcctttggattgagcggtgcttcagtgagcaaaaccgggtgctcctctggggccacacggagttcattgtaaaaggtatgatgccaaatct |
41387671 |
T |
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| Q |
259 |
tttccatgtcatcccaattgctaacaataccatgctcaattgg |
301 |
Q |
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| T |
41387670 |
tctccatgtcatcccagttactcacaataccatgttcaattgg |
41387628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 108 - 322
Target Start/End: Original strand, 1263001 - 1263215
Alignment:
| Q |
108 |
acatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaagaggagcttctgttaagagaactggat |
207 |
Q |
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| T |
1263001 |
acatacattgcaggcacattgaaagtctcgaacataatctgggtcatcttttctctattggctttaggattgagtggagcctcagtaagaagcacagggt |
1263100 |
T |
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| Q |
208 |
gctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgctaacaataccatgctcaattgggtactt |
307 |
Q |
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| T |
1263101 |
gttcttcgggagcaacacgaagctcattataaaatgtgtgatgccaaatcttttccatatcgtcccagttactaactataccatgctctataggatactt |
1263200 |
T |
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| Q |
308 |
gagagtgaggatacc |
322 |
Q |
| |
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| T |
1263201 |
caacgtgaggatacc |
1263215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 63 - 322
Target Start/End: Original strand, 43647576 - 43647835
Alignment:
| Q |
63 |
gttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcac |
162 |
Q |
| |
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| T |
43647576 |
gttgtacgaccacttgcatagagggagaggacagcctggatggccacatacatggcaggcacattgaaggtctcgaacatgatttgggtcatcttttctc |
43647675 |
T |
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| Q |
163 |
gattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttc |
262 |
Q |
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| T |
43647676 |
tgttggcctttggattaagtggagcctcagttagaagtactgggtgctcctcgggagcaacacgcaattcattgtaaaatgtgtgatgccagatcttctc |
43647775 |
T |
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| Q |
263 |
catgtcatcccaattgctaacaataccatgctcaattgggtacttgagagtgaggatacc |
322 |
Q |
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| T |
43647776 |
catgtcatcccagttactgacaataccgtgctcaatggggtacttgagagtaagaatacc |
43647835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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