View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7720_low_10 (Length: 321)
Name: NF7720_low_10
Description: NF7720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7720_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 3 - 321
Target Start/End: Original strand, 22362036 - 22362357
Alignment:
| Q |
3 |
ttgatttctgcttccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattca |
102 |
Q |
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| T |
22362036 |
ttgatttctgcttccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatactctgttgcacttggattca |
22362135 |
T |
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| Q |
103 |
catgtggtgccatcattgatccctaacatacacaacgcatgaaaaagaaaagatgaataagaacc---cagcaagatcatggttaaaatatgtaaggtct |
199 |
Q |
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| T |
22362136 |
catgtggtgccatcattgatccctaacatacacaatgcatgaaatagaaaagatgaataagaacccagcagcaatatcatggttaaaatatgtaaggtct |
22362235 |
T |
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| Q |
200 |
tgtttgtttgcataccgcggtgagattgacgtgaaaaacaccgatatcaggtattttgagcggagaataatcgccaccatccaatgcactgctccaacca |
299 |
Q |
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| T |
22362236 |
tgtttgtttgcataccgcggtgagattgacgtgaaaaacaccgatatcaggtattttgagcggagaataatcgccaccatccaatgcactgctccaacca |
22362335 |
T |
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| Q |
300 |
tatgcatttcggaaatcaggtt |
321 |
Q |
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| T |
22362336 |
tatgcatttcggaaatcaggtt |
22362357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 39815019 - 39814908
Alignment:
| Q |
15 |
tccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgcca |
114 |
Q |
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| T |
39815019 |
tccattgcattggttccatttggaaacactatttgaattctaccagaacctcttaagactatgccatactctgttgcccttggatttacatggggtgtca |
39814920 |
T |
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| Q |
115 |
tcattgatccct |
126 |
Q |
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| T |
39814919 |
tcatggatccct |
39814908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 39805734 - 39805623
Alignment:
| Q |
15 |
tccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgcca |
114 |
Q |
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| T |
39805734 |
tccattgcattggttccatttggaaacactatttgaattctaccagaacctcttatcactatgccatactctgttgcccttggatttacatggggtgtca |
39805635 |
T |
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| Q |
115 |
tcattgatccct |
126 |
Q |
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| T |
39805634 |
tcatggatccct |
39805623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 39826098 - 39825987
Alignment:
| Q |
15 |
tccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgcca |
114 |
Q |
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| T |
39826098 |
tccattgcattggttccatttggaaacactatttgaattctaccagaacctcttatcactatgccatactctgttgcccttggatttacatggggtgtca |
39825999 |
T |
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| Q |
115 |
tcattgatccct |
126 |
Q |
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|||| ||||||| |
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| T |
39825998 |
tcatggatccct |
39825987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 39902659 - 39902548
Alignment:
| Q |
15 |
tccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgcca |
114 |
Q |
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|||||||||||| |||| |||||||| | ||| |||||||| ||| ||||||||| |||||| ||| |||||||| |||||||| ||||| |||| || |
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| T |
39902659 |
tccattgcattggttccatttggaaacactatttgaattctaccagaacctcttatcactatgccatactctgttgcccttggatttacatggggtgtca |
39902560 |
T |
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| Q |
115 |
tcattgatccct |
126 |
Q |
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|||| ||||||| |
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| T |
39902559 |
tcatggatccct |
39902548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 39911117 - 39911006
Alignment:
| Q |
15 |
tccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgcca |
114 |
Q |
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|||||||||||| |||| |||||||| | ||| |||||||| ||| ||||||||| |||||| ||| |||||||| |||||||| ||||| |||| || |
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| T |
39911117 |
tccattgcattggttccatttggaaacactatttgaattctaccagaacctcttatcactatgccatactctgttgcccttggatttacatggggtgtca |
39911018 |
T |
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| Q |
115 |
tcattgatccct |
126 |
Q |
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| T |
39911017 |
tcatggatccct |
39911006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 39922260 - 39922149
Alignment:
| Q |
15 |
tccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgcca |
114 |
Q |
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|||||||||||| |||| |||||||| | ||| |||||||| ||| ||||||||| |||||| ||| |||||||| |||||||| ||||| |||| || |
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| T |
39922260 |
tccattgcattggttccatttggaaacactatttgaattctaccagaacctcttatcactatgccatactctgttgcccttggatttacatggggtgtca |
39922161 |
T |
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| Q |
115 |
tcattgatccct |
126 |
Q |
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|||| ||||||| |
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| T |
39922160 |
tcatggatccct |
39922149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 39927956 - 39927845
Alignment:
| Q |
15 |
tccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgcca |
114 |
Q |
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| T |
39927956 |
tccattgcattggttccatttggaaacactatttgaattctaccagaacctcttatcactatgccatactctgttgcccttggatttacatggggtgtca |
39927857 |
T |
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| Q |
115 |
tcattgatccct |
126 |
Q |
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|||| ||||||| |
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| T |
39927856 |
tcatggatccct |
39927845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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