View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7720_low_3 (Length: 519)
Name: NF7720_low_3
Description: NF7720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7720_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 156 - 519
Target Start/End: Complemental strand, 31643045 - 31642679
Alignment:
| Q |
156 |
gtgaaatctgataaatctgcaacaaatctgatatgctaagttgctttcttctataacttcatggcaattggattcattgatctcaattgcttatctttgt |
255 |
Q |
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| T |
31643045 |
gtgaaatctgataaatctgcaacaaatctgatatgctaagttgctttcttctataacttcatggcaattggattcattgatctcaattgcttatctttgt |
31642946 |
T |
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| Q |
256 |
gtcgtgcatgagttctagtttcccaagacttccaccatcataataattataacactatagtaccaataatccttcatcataata---ttatataatttta |
352 |
Q |
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| T |
31642945 |
gtcgtgcatgagttctagtttcccaagacttccaccatcataataattataagactatagtaccaataatccttcaacataatatttttatataatttta |
31642846 |
T |
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| Q |
353 |
attttttgcatgcataaagtaaaaggctatccacatcaattgcatcatgcatatgatcatttgaccctgtaacataatttatgtcccatttggtccaaac |
452 |
Q |
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| T |
31642845 |
attttttgcatgcataaagcaaaaggctatccacatcaattgcatcatgcatatgatcatttgaccctgtaacataatttatgtcccatttggtccaaac |
31642746 |
T |
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| Q |
453 |
ccattgacacgttaatccgtgtacattagtcccctctccctttatcccatgcatgatttcccttacc |
519 |
Q |
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| T |
31642745 |
ccattgacacgttaatccgtgtacattagtcccctctccctttatcccatgcatgatttcccttacc |
31642679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 31643189 - 31643118
Alignment:
| Q |
12 |
gatggacatctatttctgtctactgaaaaagtaaaaagaatataatcaatatagttagaaaatttgtgatga |
83 |
Q |
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| T |
31643189 |
gatggacatctatttctgtctactgaaaaagtaaaaagaatataatcaatatagttagaaaatttgtgatga |
31643118 |
T |
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