View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7720_low_4 (Length: 456)
Name: NF7720_low_4
Description: NF7720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7720_low_4 |
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| [»] scaffold0002 (5 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 170; Significance: 5e-91; HSPs: 5)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 252 - 453
Target Start/End: Original strand, 409987 - 410188
Alignment:
| Q |
252 |
tttatgatatagtaaaacttttaatctaattgtgtttcaatagattttatgacataacagtaattgatagagtaaatatggttggaatattgcacaagtt |
351 |
Q |
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| T |
409987 |
tttatgatatagtaaaacttttactctaattgtgtttcaatagattttatgacataaaagtaattgatagagtaaatatggctggaatattgcacaagtt |
410086 |
T |
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| Q |
352 |
gtataaaacttgtgcaaacaaatttttaaccggtgtggagctaaattcaccgagaggagggatttgaccagaagtatgaaaacagagaacaaaagagtta |
451 |
Q |
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| T |
410087 |
gtataaaacttgtggaaacaaatttttaaccggtgtggagccaaattcaccgagatgagggatttgaccagaagtatgaaaacaaagaacgaaagagtta |
410186 |
T |
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| Q |
452 |
tt |
453 |
Q |
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| T |
410187 |
tt |
410188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 409820 - 409895
Alignment:
| Q |
84 |
aatttcaattttcaacctcaagggaaaaactttaaattccatataagacggttgtaaaatattcattgatgtttcc |
159 |
Q |
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| T |
409820 |
aatttcaattttcaacctcaagggaaaaactttaaattccatataagacggttgtaaaatattcattgatgtttcc |
409895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 409769 - 409824
Alignment:
| Q |
1 |
tttctttggaagtgggtttggtgtaggtgaacaatgttaaaatcgcataaaaattt |
56 |
Q |
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| T |
409769 |
tttctttggaagtgggtttggtttaggtgaacaatgttaaaatcgcataaaaattt |
409824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 417
Target Start/End: Original strand, 425667 - 425764
Alignment:
| Q |
320 |
agagtaaatatggttggaatattgcacaagttgtataaaacttgtgcaaacaaatttttaaccggtgtggagctaaattcaccgagaggagggatttg |
417 |
Q |
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| T |
425667 |
agagtaaatatagctggaatatcgcacgagttggataaagtttatgcaaacagttttttaaccgctgcggagcaaaattgaccgggaggagggatttg |
425764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 408100 - 408185
Alignment:
| Q |
81 |
aacaatttcaattttcaacctcaagggaaaaactt-------taaattccatataagacggttgtaaaatattcattgatgtttcc |
159 |
Q |
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| T |
408100 |
aacaatttcacttttcaacctcaaggaaaaaatttaaatgtttaaattccatataagacgtttgtaaactattcatttatgtttcc |
408185 |
T |
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