View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7720_low_5 (Length: 400)
Name: NF7720_low_5
Description: NF7720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7720_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 37328045 - 37328414
Alignment:
| Q |
18 |
gatgttagtgtgactgttagcccaatgagattcactgtttagcaagaataagattaatcttagaggaaacaaatttgctaaggacaaaggatttaggttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
37328045 |
gatgttagtgtgactgttagcccaatgagattcactgtttagcaagaataagattaatcttagaggaaacaaatttgataaagccaaaggatttaggttt |
37328144 |
T |
|
| Q |
118 |
gtttggtttggtttaatagagagaagaagaacaaatgagggaagagattttcataacgtgcatgtttgatttaaaagatgagtgatgaggaatatttgtt |
217 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37328145 |
gtttggtttggtttaacagagaggagaagaacaaatgagggaagagatttttataacgtgcatgtttgatttaaaagatgagtgatgaggaatatttgtt |
37328244 |
T |
|
| Q |
218 |
gagaggtaatgaatattaatcacatctatgtttgattttaaaattaatttaccattagaaaagagactatatatatccatgaatgaaatattattgtagg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37328245 |
gagaggtaatgaatattaatcacatctatgtttgattttaaaattaatttaccattagaaaagagactatatatatccatgaatgaaatattattgtagg |
37328344 |
T |
|
| Q |
318 |
ttgacgacaagaaaagaataatttcattagaaaatgactttgttacaactacaaaacttggtatatatat |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37328345 |
ttgacgacaagaaaagaataatttcattagaaaatgactttgttacaactacaaaacttggtatatatat |
37328414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University