View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7720_low_6 (Length: 353)
Name: NF7720_low_6
Description: NF7720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7720_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 48222187 - 48222515
Alignment:
| Q |
18 |
aagtacctgtgttggcacataaccactactagcagtagcagctgatggtgaggcaggaactccaacataaatcttactaaccttaatagtcgaaacccat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222187 |
aagtacctgtgttggcacataaccactactagcagtagcagctgatggtgaggcaggaactccaacataaatcttactaaccttaatagtcgaaacccat |
48222286 |
T |
|
| Q |
118 |
tgattccaagatttttggaacttgttgaggttactagcttcaatttgacaaggaccattgttgtaaaattgaacccaaacatagtcaaatagtcctgttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222287 |
tgattccaagatttttggaacttgttgaggttactagcttcaatttgacaaggaccattgttgtaaaattgaacccaaacatagtcaaatagtcctgttg |
48222386 |
T |
|
| Q |
218 |
ataatgctcctttgagatgttgatcaggaaaaggacattgaggtgcagctgttaagtacacttttttggtccctctatgttgagacagtcttcttgcaag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222387 |
ataatgctcctttgagatgttgatcaggaaaaggacattgaggtgcagctgttaagtacacttttttggtccctctatgttgagacagtcttcttgcaag |
48222486 |
T |
|
| Q |
318 |
ctcactataaaaaacttcaccaccaccaa |
346 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48222487 |
ctcactataaaaaacttcaccaccaccaa |
48222515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 47980419 - 47980378
Alignment:
| Q |
174 |
attgttgtaaaattgaacccaaacatagtcaaatagtcctgt |
215 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
47980419 |
attgttgtaaaattgcacccaaacatagtcaaaaagacctgt |
47980378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 8139437 - 8139403
Alignment:
| Q |
178 |
ttgtaaaattgaacccaaacatagtcaaatagtcc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8139437 |
ttgtaaaattgaacccaaacatagtcaaaaagtcc |
8139403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University