View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7720_low_7 (Length: 352)
Name: NF7720_low_7
Description: NF7720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7720_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 34566518 - 34566845
Alignment:
| Q |
18 |
accaaccgggttcggaacaatgacaagaacaccctggtgaaatattaagcttaacttcattcaaaatctcattccaaagcttcaattcaccttctcttgt |
117 |
Q |
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| T |
34566518 |
accaaccgggttcggaacaatgacaagaacaccctggtgaaatattaagcttaacttcattcaaaatctcattccaaagcttcaattcaccttctcttgt |
34566617 |
T |
|
| Q |
118 |
attactttccaacattggactcatattcatccaacaaaacaaccctgcattacctttcaagcattcaattccagcacttttcaaaccttcaatgatcatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34566618 |
attactttccaacattggactcatattcatccaacaaaacaaccctgcattacctttcaagcattcaattccagcacttttcaaaccttcaatgatcatt |
34566717 |
T |
|
| Q |
218 |
tcatatcttttccttaatctttctctattgaccttgatgtaattatcagtgaaactttcatctgacaacattgatgctaaaagatgttgtgtctgtgaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34566718 |
tcatatcttttccttaatctttctctattgaccttgatgtaattatcagtgaaactttcatctgacaacattgatgctaaaagatgttgtgtttgtgaag |
34566817 |
T |
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| Q |
318 |
atattaatgtaaaactcgatattcttcg |
345 |
Q |
| |
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||||||| ||||||||||| |||||||| |
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| T |
34566818 |
atattaaggtaaaactcgacattcttcg |
34566845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 42788960 - 42789073
Alignment:
| Q |
133 |
tggactcatattcatccaacaaaacaaccctgcattacctttcaagcattcaattccagcacttttcaaaccttcaatgatcatttcatatcttttcctt |
232 |
Q |
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|||||||| |||||||||||||||||| |||||||| |||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||| | |
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| T |
42788960 |
tggactcaaattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttc |
42789059 |
T |
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| Q |
233 |
aatctttctctatt |
246 |
Q |
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|||||||| ||||| |
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| T |
42789060 |
aatctttccctatt |
42789073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 42798498 - 42798611
Alignment:
| Q |
133 |
tggactcatattcatccaacaaaacaaccctgcattacctttcaagcattcaattccagcacttttcaaaccttcaatgatcatttcatatcttttcctt |
232 |
Q |
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|||||||| |||||||||||||||||| |||||||| |||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||| | |
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| T |
42798498 |
tggactcaaattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttc |
42798597 |
T |
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| Q |
233 |
aatctttctctatt |
246 |
Q |
| |
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|||||||| ||||| |
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| T |
42798598 |
aatctttccctatt |
42798611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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