View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7720_low_9 (Length: 336)
Name: NF7720_low_9
Description: NF7720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7720_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 6997646 - 6997967
Alignment:
| Q |
1 |
gatggtttttcatcataacttgagagatggttgaaaatttctcttatgttttggtaaacagagaattgtttgattgttcctttaatccatgcacatgtct |
100 |
Q |
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| T |
6997646 |
gatggtttttcatcataacttgagagatggttgaaaatttctcttatgttttggtaaacagagaattgtttgattgttcctttaatccatgcacatgtct |
6997745 |
T |
|
| Q |
101 |
tatcagttacctcaataaatatttaatatacctgcatttacactcatataagccgaaacagttgactcactaatttctggcacatttgtaatatgtgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6997746 |
tatcagttacctcaataaatatttaatatacctgcatttacactcatataagccgaaacagttgactcactaatttctggcacatttgtaatatgtgcaa |
6997845 |
T |
|
| Q |
201 |
gtgtatgcgattataattaccagctcaataaggaatttctaatcttcatgtgcctctattcgcaaatttctaatttttaatcttcatgtgactcttaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6997846 |
gtgtatgcgattataattaccagctcaataaggaatttctaatcttcatgtgcctctattcgcaaatttctaatttttaatcttcatgtgactcttaact |
6997945 |
T |
|
| Q |
301 |
accctcttttggaaatatttgt |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6997946 |
accctcttttggaaatatttgt |
6997967 |
T |
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