View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_10 (Length: 540)
Name: NF7721_high_10
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 32725641 - 32725113
Alignment:
| Q |
1 |
ttttccgatgcagaaccgggcccggactttggtggagagggtattttttgggcctagaattgcaggctcgttgggccggatatatagaacgggtggtgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725641 |
ttttccgatgcagaaccgggcccggactttggtggagagggtattttttgggcctagaattgcaggctcgttgggccggatatatagaacgggtggtgaa |
32725542 |
T |
|
| Q |
101 |
gaggagagaaggtcatggggggagtggttaggtgaggtagggtttaggggagttccggtgagctttgcaaatcattgtcaagcgaagctgttgttagggc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32725541 |
gaggagagaaggtcatggggggagtggttaggtgaggtagggtttaggggagttccggtgagctttgcaaatcattgtcaagcaaagctgttgttagggc |
32725442 |
T |
|
| Q |
201 |
tttttaatgatgggtatagggttgaagaggtgggtgtgggtagtaataagttggtgttggattggaaatcaagacgtttgctttctgcttccctttggac |
300 |
Q |
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| T |
32725441 |
tttttaatgatgggtatagggttgaagaggtgggtgtgggtagtaataagttggtgttggattggaaatcaagacgtttgctttctgcttccctttggac |
32725342 |
T |
|
| Q |
301 |
ttgttcttcttcagattctgatttataggatgctgattaattaagtgctaatctatactagctaaacaatcaattattcatgccatgtgcctttctaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725341 |
ttgttcttcttcagattctgatttataggatgctgattaattaagtgctaatctatactagctaaacaatcaattattcatgccatgtgcctttctaatt |
32725242 |
T |
|
| Q |
401 |
gttttttatttactgaccctctaaaaatggaaacaattattggtttaatgtctcatgttaagttccacttatggtagttttttgatcgttgaaggatctc |
500 |
Q |
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| T |
32725241 |
gttttttatttactgaccctctaaaaatggaaacaattattggtttaatgtctcatgttaagttccacttatggtagttttttgatcgttgaaggatctt |
32725142 |
T |
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| Q |
501 |
aaattttgttgacaaatgtgactgatgtc |
529 |
Q |
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| T |
32725141 |
aaattttgttgacaaatgtgactgatgtc |
32725113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 304
Target Start/End: Complemental strand, 24256537 - 24256355
Alignment:
| Q |
116 |
tggggggagtggttaggtgaggtagggtttaggggagttccggtgagctttgcaaatcattgtcaagcgaagctgttgttagggctttttaatgatgggt |
215 |
Q |
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|||||||||||||| |||| || |||||| || |||||| | |||| || || ||||||||||| ||| |||| || || | ||||| ||||||| |
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| T |
24256537 |
tggggggagtggttgggtgtggaagggttcagaggagttaacataagctatggtaaccattgtcaagcaaagttgttattgggtttatttaacgatgggt |
24256438 |
T |
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| Q |
216 |
atagggttgaagaggtgggtgtgggtagtaataagttggtgttggattggaaatcaagacgtttgctttctgcttccctttggacttgt |
304 |
Q |
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||||||| |||||| ||||| | |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24256437 |
atagggtggaagagttgggt------aacaataagttggtgttaggttggaaatcaagacgtttgctttctgcttctgtttggacttgt |
24256355 |
T |
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