View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_high_101 (Length: 217)

Name: NF7721_high_101
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_high_101
NF7721_high_101
[»] chr5 (3 HSPs)
chr5 (92-178)||(13955027-13955114)
chr5 (17-86)||(13954921-13954990)
chr5 (22-85)||(7392692-7392755)
[»] scaffold0063 (1 HSPs)
scaffold0063 (17-86)||(57468-57537)
[»] chr3 (3 HSPs)
chr3 (24-83)||(40024152-40024211)
chr3 (17-86)||(47235047-47235117)
chr3 (17-83)||(14193442-14193508)
[»] scaffold0050 (1 HSPs)
scaffold0050 (17-83)||(36193-36259)
[»] chr8 (2 HSPs)
chr8 (83-143)||(10249140-10249201)
chr8 (17-86)||(10249043-10249112)
[»] chr4 (3 HSPs)
chr4 (17-86)||(38640135-38640204)
chr4 (93-144)||(38640242-38640293)
chr4 (17-79)||(53814160-53814222)
[»] chr1 (5 HSPs)
chr1 (17-86)||(16146872-16146941)
chr1 (24-83)||(7857031-7857090)
chr1 (17-87)||(24658283-24658353)
chr1 (17-78)||(52277939-52278000)
chr1 (22-81)||(4391311-4391371)
[»] chr7 (2 HSPs)
chr7 (22-86)||(3477751-3477815)
chr7 (24-83)||(34389397-34389456)
[»] chr2 (3 HSPs)
chr2 (22-86)||(14107050-14107114)
chr2 (22-86)||(37771319-37771383)
chr2 (17-86)||(7873626-7873695)
[»] chr6 (2 HSPs)
chr6 (23-87)||(20702453-20702517)
chr6 (93-143)||(20702554-20702603)


Alignment Details
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 13955027 - 13955114
Alignment:
Q  92 aacacctatcggcaccacacatcacccc-tccacaccacacgtccgtcaccactacatttttcttttactgtgtacgtataatatgac 178  Q
    |||||||||||  |||| |||||||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  13955027 aacacctatcgaaaccatacatcaccccctccacacgacacgtccgtcaccaccacatttttcttttattgtgtacgtataatatgac 13955114  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 13954921 - 13954990
Alignment:
Q  17 caacaaccacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatgaaa 86  Q
    |||| ||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  13954921 caaccaccacgatccttacaacgacaaacgattcgggagtttgttgaaggaggattaatcgtgaatgaaa 13954990  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 7392692 - 7392755
Alignment:
Q  22 accacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatgaa 85  Q
    |||||||||||||| ||||||||||||||  ||||| ||||| |||||||||||||||||||||    
T  7392692 accacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaa 7392755  T

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Target: scaffold0063 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 57537 - 57468
Alignment:
Q  17 caacaaccacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatgaaa 86  Q
    |||| |||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  57537 caaccaccacgatccttacgacgacaaacgatccgggagtttgttgaaggaggattaatcgtgaaagaaa 57468  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 40024152 - 40024211
Alignment:
Q  24 cacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatg 83  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  40024152 cacgatccttacgacgacaaacgatccgagagtttgttgaaggaggattaatcatgaatg 40024211  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 47235117 - 47235047
Alignment:
Q  17 caacaaccacgatccttacaacgacaaacgatccaagagttt-gttgaaggaggattaatcgtgaatgaaa 86  Q
    |||| ||||||||||||||||| || ||||| || ||||||  ||||||||||||||||||||| ||||||    
T  47235117 caaccaccacgatccttacaacaacgaacgacccgagagttgcgttgaaggaggattaatcgtggatgaaa 47235047  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 14193508 - 14193442
Alignment:
Q  17 caacaaccacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatg 83  Q
    |||| |||||||||||||| ||||||||||||||  ||  | ||||||| | |||||||||||||||    
T  14193508 caaccaccacgatccttacgacgacaaacgatccgggatctcgttgaagtatgattaatcgtgaatg 14193442  T

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Target: scaffold0050 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 36259 - 36193
Alignment:
Q  17 caacaaccacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatg 83  Q
    |||| |||||||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||||    
T  36259 caaccaccacgatccttacgacgacaaacgatccaggagttcgttgaaggaggattaatcatgaatg 36193  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 10249140 - 10249201
Alignment:
Q  83 gaaatggacaacacctatcggcaccacacatca-cccctccacaccacacgtccgtcaccac 143  Q
    |||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10249140 gaaacggaccacacctatcggcaccacacatcaccccctccacaccacacgtccgtcaccac 10249201  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 10249043 - 10249112
Alignment:
Q  17 caacaaccacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatgaaa 86  Q
    |||| |||||||||||||| |  |||||||||    ||||| ||||||||||||||||||||||||||||    
T  10249043 caaccaccacgatccttacgatcacaaacgatttgggagttcgttgaaggaggattaatcgtgaatgaaa 10249112  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 38640135 - 38640204
Alignment:
Q  17 caacaaccacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatgaaa 86  Q
    |||| |||||||||||||| |||||||||||| |  ||||| |||||||||||||||||| |||||||||    
T  38640135 caaccaccacgatccttacgacgacaaacgattcgggagttcgttgaaggaggattaatcatgaatgaaa 38640204  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 38640242 - 38640293
Alignment:
Q  93 acacctatcggcaccacacatcacccctccacaccacacgtccgtcaccact 144  Q
    |||| ||||||||||||||||| |||||||||||||||  ||||||||||||    
T  38640242 acacatatcggcaccacacatcccccctccacaccacatatccgtcaccact 38640293  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 53814160 - 53814222
Alignment:
Q  17 caacaaccacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtg 79  Q
    |||| |||||||||||||| ||||| ||| |||| |||||  ||||||||||||| |||||||    
T  53814160 caaccaccacgatccttacgacgacgaacaatccgagagtgcgttgaaggaggatcaatcgtg 53814222  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 16146941 - 16146872
Alignment:
Q  17 caacaaccacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatgaaa 86  Q
    |||| |||||||||||||  ||||||||||||||  ||||| ||||||||||||||||||||| ||||||    
T  16146941 caaccaccacgatccttatgacgacaaacgatccgggagttcgttgaaggaggattaatcgtggatgaaa 16146872  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 7857090 - 7857031
Alignment:
Q  24 cacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatg 83  Q
    |||||||||||| |||||||||||||||  |||| |||||||||||||||||| ||||||    
T  7857090 cacgatccttacgacgacaaacgatccagaagttcgttgaaggaggattaatcatgaatg 7857031  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 24658353 - 24658283
Alignment:
Q  17 caacaaccacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatgaaat 87  Q
    |||| |||||||||||||| || |||||| ||||  ||||| |||||||||||||||||| || |||||||    
T  24658353 caaccaccacgatccttacgacaacaaacaatccgggagttcgttgaaggaggattaatcatggatgaaat 24658283  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 52278000 - 52277939
Alignment:
Q  17 caacaaccacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgt 78  Q
    |||| |||||||||||||| |||||| ||||||||  |||| ||||| ||||||||||||||    
T  52278000 caaccaccacgatccttacgacgacatacgatccagaagttcgttgatggaggattaatcgt 52277939  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 4391371 - 4391311
Alignment:
Q  22 accacgatccttacaacgacaaacgatccaagagtt-tgttgaaggaggattaatcgtgaa 81  Q
    |||||||||||||| ||||| ||||||||| |||||  |  ||||||||||||||||||||    
T  4391371 accacgatccttacgacgacgaacgatccaggagttgcgaagaaggaggattaatcgtgaa 4391311  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 3477815 - 3477751
Alignment:
Q  22 accacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatgaaa 86  Q
    |||||||||||||| | ||||||||| ||| ||||| |||||||||||||||||||| |||||||    
T  3477815 accacgatccttacgatgacaaacgagccaggagttcgttgaaggaggattaatcgtaaatgaaa 3477751  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 34389456 - 34389397
Alignment:
Q  24 cacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatg 83  Q
    |||||||||||| ||||||||||||||   ||||||||||||||||||||||| ||||||    
T  34389456 cacgatccttacgacgacaaacgatccggaagtttgttgaaggaggattaatcatgaatg 34389397  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 14107050 - 14107114
Alignment:
Q  22 accacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatgaaa 86  Q
    |||| ||||||||| ||||||||||||||  ||||| ||||||||| ||||||||||||||||||    
T  14107050 accatgatccttacgacgacaaacgatccgggagttcgttgaaggaagattaatcgtgaatgaaa 14107114  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 37771319 - 37771383
Alignment:
Q  22 accacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatgaaa 86  Q
    |||||||| ||||||||||||||||||||  ||||| |||||| ||||||||||| ||| |||||    
T  37771319 accacgattcttacaacgacaaacgatccgggagttcgttgaaagaggattaatcatgactgaaa 37771383  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 7873695 - 7873626
Alignment:
Q  17 caacaaccacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatgaaa 86  Q
    |||| |||||||||||||  ||||||||| |||| | |||| ||||||| |||||||||||| |||||||    
T  7873695 caaccaccacgatccttatgacgacaaaccatccgaaagttcgttgaagaaggattaatcgtaaatgaaa 7873626  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 20702453 - 20702517
Alignment:
Q  23 ccacgatccttacaacgacaaacgatccaagagtttgttgaaggaggattaatcgtgaatgaaat 87  Q
    ||||||||||||| |  |||||||||||  ||||| |||||||||||||||||| ||||||||||    
T  20702453 ccacgatccttacgataacaaacgatccgggagttcgttgaaggaggattaatcatgaatgaaat 20702517  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 20702554 - 20702603
Alignment:
Q  93 acacctatcggcaccacacatcacccctccacaccacacgtccgtcaccac 143  Q
    |||| ||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  20702554 acacatatcgacaccacacatc-ccccttcacaccacacgtccgtcaccac 20702603  T

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