View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_102 (Length: 216)
Name: NF7721_high_102
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_102 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 8028134 - 8028319
Alignment:
| Q |
13 |
agatgaatgggtgatgatttatgttgattata--cattctatatgttcagccttatgaagagcattacgttaaggatgaggccataccttggatgatcta |
110 |
Q |
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| T |
8028134 |
agatgaatgggtgatgatttatgttgattatatacattctatatgttcagccttatgaagagcattacgttaaggatgaagccataccttggatgatcta |
8028233 |
T |
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| Q |
111 |
gaaaataaactatagctcaattttttaatatcgtgtttgttctaattttctgtgtgccttaaaagtgagtgcagaaactgtcatgg |
196 |
Q |
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| T |
8028234 |
gaaaataaactatagctcaattttttaatatcgtgtttgttctaattttctgtgtgccttaaaagtgagtgcagaaactgtcatgg |
8028319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 8018539 - 8018645
Alignment:
| Q |
13 |
agatgaatgggtgatgatttatgttgattatacattctatatgttcagccttatgaagagcattacgttaaggatgaggccataccttggatgatctaga |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
8018539 |
agatgaatgggtgatgttttatgttgattatacattctatatgttcagccttttgaagagcattacactaaggatgaggccataccttggatgatccaga |
8018638 |
T |
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| Q |
113 |
aaataaa |
119 |
Q |
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||||||| |
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| T |
8018639 |
aaataaa |
8018645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 8018883 - 8018942
Alignment:
| Q |
138 |
atatcgtgtttgttctaattttctgtgtgccttaaaagtgagtgcagaaactgtcatggc |
197 |
Q |
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|||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
8018883 |
atatagtgtttgttctaatttgttgtgtgccttgaaagtgagtgcagaaactgtcatggc |
8018942 |
T |
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