View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_15 (Length: 511)
Name: NF7721_high_15
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 17303381 - 17303869
Alignment:
| Q |
1 |
tacattatgtcacggcccaaatcgtgggcacatagcattatttaaaaccctaataatcacaacaatataagacaattcagcacaacaagaattaaacaaa |
100 |
Q |
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||||| || |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17303381 |
tacatcatatcacggcctaaatcgtgggcacatagctttatttaaaaccctaataatcacaacaatataagacaattcagcacaacaagaattaaacaaa |
17303480 |
T |
|
| Q |
101 |
gggaaacatgaacatgataagaagnnnnnnnnnnnnnncaaacctgaaatgataatgaccaagaccatgtttaacgccccatttaaactctccaacatat |
200 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
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| T |
17303481 |
gggaaacatgaacatgaaaagaaaaagaaaagaaaa---aaacctgaaatgataatgaccaaggccatgtttaacaccccatttaaattctccaacatat |
17303577 |
T |
|
| Q |
201 |
ctactcccatcttcacaagtatgaacaccgcacccatgactctgtccattagaccattctccagtataaacatccccagtataaaacctataaacaccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17303578 |
ctactcccatcttcacaagtatgaacaccgcacccatgactctgtccattagaccattctccagtataaacatccccagtataaaacctataaacaccaa |
17303677 |
T |
|
| Q |
301 |
acccatgtctcaatccttgtcgatattgccctctataacgacttccccttgcccatgtttccacaccatacccatcatacctcccatcaatccaatcccc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17303678 |
acccatgtctcaatccttgtcgatattgccctctataacgacttccccttgcccatgtctccacaccatacccatcatacctcccatcaatccaatcccc |
17303777 |
T |
|
| Q |
401 |
ttcatatctcccactcatactataataataaacaccactccctgaacacttccccttatgaaactccccctcgtaagcgtccccgttcccga |
492 |
Q |
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| T |
17303778 |
ttcatacctcccactcatactataataataaacaccactccctgaacacttccccttatgaaactccccctcgtaaacgtccccgttcccga |
17303869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 150 - 442
Target Start/End: Original strand, 1586796 - 1587088
Alignment:
| Q |
150 |
tgataatgaccaagaccatgtttaacgccccatttaaactctccaacatatctactcccatcttcacaagtatgaacaccgcacccatgactctgtccat |
249 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||||| |
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| T |
1586796 |
tgatagtggccaagaccatgtttaacaccccacttaaactctccaacaaatctactcccatcatcacaagtatgaacaccactaccatgactctgtccat |
1586895 |
T |
|
| Q |
250 |
tagaccattctccagtataaacatccccagtataaaacctataaacaccaaacccatgtctcaatccttgtcgata-ttgccctctataacgacttcccc |
348 |
Q |
| |
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| T |
1586896 |
tcaaccattcaccagcataaacatctccagtataaaatctataaacaccaaacccatttctcaatccatctctatacataccct-tatacctacttccct |
1586994 |
T |
|
| Q |
349 |
ttgcccatgtttccacaccatacccatcatacctcccatcaatccaatccccttcatatctcccactcatactataataataaacaccactccc |
442 |
Q |
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| ||| | || |||||| | || ||||| |||| |||| ||||| |||||||||||| ||||||||| |||| |||||||| |||||||| |
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| T |
1586995 |
tactccaactctcaacaccaaaaccttcatatttcccgtcaacccaattcccttcatatcttccactcatattatagtaataaaccccactccc |
1587088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 165 - 466
Target Start/End: Original strand, 41090116 - 41090417
Alignment:
| Q |
165 |
ccatgtttaacgccccatttaaactctccaacatatctactcccatcttcacaagtatgaacaccgcacccatgactctgtccattagaccattctccag |
264 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||| |||||||| | ||||||||||| || ||||||||| ||| |||||| ||||||| |||| |
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| T |
41090116 |
ccatgtttaacaccccatttaaattccccaacataatggctcccatcattgcaagtatgaactccaaacccatgacactgaccattacaccattcaccag |
41090215 |
T |
|
| Q |
265 |
tataaacatccccagtataaaacctataaacaccaaacccatgtctcaatccttgtcgatattgccctctataacgacttccccttgcccatgtttccac |
364 |
Q |
| |
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|||| ||||| ||| | |||||||||||| |||| ||||| ||||| || | | ||| || || | ||| | |||||| || ||||| ||||| || |
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| T |
41090216 |
tatagacatcaccaccaaaaaacctataaattccaattccatgcctcaaacccttcctatactgtccacgatacctacttcctctagcccacgtttcaac |
41090315 |
T |
|
| Q |
365 |
accatacccatcatacctcccatcaatccaatccccttcatatctcccactcatactataataataaacaccactccctgaacacttccccttatgaaac |
464 |
Q |
| |
|
|||| | ||||||||| | |||||||||||||| |||||| |||| ||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
41090316 |
accaaaaccatcatactttccatcaatccaatcaccttcaaatcttccactcatatgaaaatgataaacaccactccctgaacacttccccttatgaaac |
41090415 |
T |
|
| Q |
465 |
tc |
466 |
Q |
| |
|
|| |
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|
| T |
41090416 |
tc |
41090417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 158 - 439
Target Start/End: Original strand, 24238788 - 24239069
Alignment:
| Q |
158 |
accaagaccatgtttaacgccccatttaaactctccaacatatctactcccatcttcacaagtatgaacaccgcacccatgactctgtccattagaccat |
257 |
Q |
| |
|
|||||||||||||||| || | ||||| || |||||||| | ||||||||| ||||| |||||||| | |||||||||||||||||| ||||| |
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| T |
24238788 |
accaagaccatgtttagaaccaaacttaaattcaccaacataacaactcccatcagaacaagattgaacaccaaaaccatgactctgtccattaaaccat |
24238887 |
T |
|
| Q |
258 |
tctccagtataaacatccccagtataaaacctataaacaccaaacccatgtctcaatccttgtcgatattgccctctataacgacttccccttgcccatg |
357 |
Q |
| |
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|| |||| |||| ||| ||||||||||| |||||||||||| | ||||||||||| |||||| ||| || |||| | ||||||||| ||||| |
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| T |
24238888 |
tccccagaataacaatcaccagtataaaatctataaacaccataaccatgtctcaaaccttgtttataacaacccttatatctacttcccctagcccagc |
24238987 |
T |
|
| Q |
358 |
tttccacaccatacccatcatacctcccatcaatccaatccccttcatatctcccactcatactataataataaacaccact |
439 |
Q |
| |
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|||| | ||||| |||||||| | ||||||| |||||| ||||||||||| ||||||| | ||||| |||||| ||||| |
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| T |
24238988 |
tttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataataatgataaactccact |
24239069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 409
Target Start/End: Original strand, 32693598 - 32693773
Alignment:
| Q |
234 |
ccatgactctgtccattagaccattctccagtataaacatccccagtataaaacctataaacaccaaacccatgtctcaatccttgtcgatattgccctc |
333 |
Q |
| |
|
|||||||| || |||||| ||||||| |||| | || ||| |||||||| ||||||||||||||| | |||||||||| ||||| || ||| || || |
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|
| T |
32693598 |
ccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccataaccatgtctcattccttttctatactgaccct |
32693697 |
T |
|
| Q |
334 |
tataacgacttccccttgcccatgtttccacaccatacccatcatacctcccatcaatccaatccccttcatatct |
409 |
Q |
| |
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|||| | ||| || || ||||| | || | ||||| |||||||| || ||||||| |||||| ||||||||||| |
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|
| T |
32693698 |
tatatctactccctctagcccaactctcaattccatatccatcatatcttccatcaacccaatcaccttcatatct |
32693773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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