View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_20 (Length: 486)
Name: NF7721_high_20
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 38886475 - 38886943
Alignment:
| Q |
1 |
gctatagaaccaagtaaagggttgcttaaaagcattgtttttggaccagattcatcagaaacaaaacagactaaacctgaggatgaagaagatggtgaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38886475 |
gctatagaaccaagtaaagggttgcttaaaagcattgtttttggaccagattcatcagaaacaaaacagactaaacctgaggatgaagaagatggtgaga |
38886574 |
T |
|
| Q |
101 |
aaccagaagggattaaagcaaatgaaatacggtaccatgtcatttcattaggatcaaagaggtagccttcaaaggaagtactatcagtgatgttgttact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38886575 |
aaccagaagggattaaagcaaatgaaatacggtaccacgtcatttcattaggatcaaagaggtagccttcaaaggaagtactatcagtgatgttgttact |
38886674 |
T |
|
| Q |
201 |
gtttttgtagatgtgagtttttgatctggttttgtgtttgaagaagatgaaccagtggaaacgaggtgaaacttgaaggtataattcaaggaaagagttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38886675 |
gtttttgtagatgtgagtttttgatctggttttgtgtttgaagaagatgaaccagtggaaacgaggtgaaacttgaaggtataattcaaggaaagagttg |
38886774 |
T |
|
| Q |
301 |
gaaaagagaagagagtagaatctcttgcagacagaacgtgcacggaagaaagctggtggaggaaggaaagctatgatgcgatcaagtagtctctgtggaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38886775 |
gaaaagagaagagagtagaatctcttgcagacagaacgtgcacggaagaaagctggtggaggaaggaaagctatgatgcgatcaagtagtctctgtggaa |
38886874 |
T |
|
| Q |
401 |
gcttactccatattctgctgttcatccatggagtagtagaagtagtggtgtaaggagcagtagttatgt |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38886875 |
gcttactccatattctgctgttcatccatggagtagtagaagtagtggtgtaaggagcagtagttatgt |
38886943 |
T |
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