View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_21 (Length: 469)
Name: NF7721_high_21
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Original strand, 29805436 - 29805868
Alignment:
| Q |
16 |
aatatgtgatatataacaaatgtgtcttatatatgtaatgttttaaggttttgtgcgaagatataatgtctctctattatgatactaaattattggcttg |
115 |
Q |
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| T |
29805436 |
aatatgtgatatataataaatgtgtcttatatatctcatgttttaaggttttgtgtgaagatataatgtctctctattatgatactaattcattggcttg |
29805535 |
T |
|
| Q |
116 |
tttatactctcgccctctcccgaactcttgaacaattttaatgatggtcaatggtgccttcgatggtaaaaatcacatattttcttatttgatgttgaga |
215 |
Q |
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| T |
29805536 |
ttcttactctcgccctctcccgaactcttcaacaattttaatgatggtcaatggtgccttccatggtaaaaatcacatattttcttatttgatgttgaga |
29805635 |
T |
|
| Q |
216 |
tgaagacttgatcaattttcactcgacaaaaacaaagacaaataggtaataaaaagttaattgactaggatgagagagctcaaaagtgaagttataaaca |
315 |
Q |
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| T |
29805636 |
tgaagacttgatcaattttcactcgacaaaaacaaagacaaataggtaataaaaagttaattgactagggtgagagagctcaaaagtgaagttataaaca |
29805735 |
T |
|
| Q |
316 |
gtcgaaagttcaatttccacttctatcatctgaccaaattaatattcaaccatcttnnnnnnnntgtatacgaattaaattttgaagtatatgtattcat |
415 |
Q |
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| T |
29805736 |
gttgaaagttcaatttccacttctatcatctgtccaaattaatattcagccatctt--aaaaaatttatacgaattaaattttgaagtatatgtattcat |
29805833 |
T |
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| Q |
416 |
tttctcatgtttttattatcaacacatatcatgtc |
450 |
Q |
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| T |
29805834 |
tttctcatgtttttattatcaacacatatcatgtc |
29805868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 429
Target Start/End: Complemental strand, 7113679 - 7113645
Alignment:
| Q |
395 |
ttttgaagtatatgtattcattttctcatgttttt |
429 |
Q |
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| T |
7113679 |
ttttgaagtacatgtattcattttctcatgttttt |
7113645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 429
Target Start/End: Original strand, 8780484 - 8780518
Alignment:
| Q |
395 |
ttttgaagtatatgtattcattttctcatgttttt |
429 |
Q |
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| T |
8780484 |
ttttgaagtacatgtattcattttctcatgttttt |
8780518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 38892477 - 38892441
Alignment:
| Q |
51 |
taatgttttaaggttttgtgcgaagatataatgtctc |
87 |
Q |
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| T |
38892477 |
taatgttttaaggttttgagcgaagatatgatgtctc |
38892441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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