View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_26 (Length: 434)
Name: NF7721_high_26
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 144 - 416
Target Start/End: Complemental strand, 33315217 - 33314945
Alignment:
| Q |
144 |
gttatcatcatggtcacgaacaactccaccggcgcctataatctcgcgttataacaactaacacttaaattattattcaagtgattggtatttggtatcc |
243 |
Q |
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| T |
33315217 |
gttatcatcatggtcacgaacaactccaccggcgtctataatctcgcgttataacaactaacactaaaattattattcaagtgattggtatttggtgtcc |
33315118 |
T |
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| Q |
244 |
atatctctaattttttataattaaatttagtgatgaatttagtggtgacgagtttcaatctagcagtgtttgaacttttaatatagtttcttacccctca |
343 |
Q |
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| T |
33315117 |
atatctctaattttttataattaaatttagtgatgaatttagtagtgacgagtttcaatctagcagtgtttgaacttttaatatagtttcttacccctca |
33315018 |
T |
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| Q |
344 |
tgtagatataggagagtagcttgtccacatgttgcctaaatgtgctttagacaaacctaactatatttggaat |
416 |
Q |
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| T |
33315017 |
tgtagatataggagagtagcttgtccacatgttgcctaaatgtgctttagacaaacctaaccatatttggaat |
33314945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 33315396 - 33315266
Alignment:
| Q |
14 |
aatattaattagatagtacaattggaaggaaaaatcaatcaaaacatcattaaaatttgaaagtgatgctcattttagccgagatcatagcaagttgcaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||||||| |
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| T |
33315396 |
aatattaattagatagtacaattggaaggaaaaatcaatcaaaacaacattaaaatttgaaaataacgctcattttagccgagatcatagcaagttgcaa |
33315297 |
T |
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| Q |
114 |
tcctaaattgaataatacaagtttcgccaag |
144 |
Q |
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| T |
33315296 |
tcctaaattgaataatacaagtttcaccaag |
33315266 |
T |
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