View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7721_high_27 (Length: 427)
Name: NF7721_high_27
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 241 - 411
Target Start/End: Complemental strand, 24929685 - 24929515
Alignment:
| Q |
241 |
gcatatataactgtaacattggccatcagtatttttgaaagacctgctagcactaacttcttttgcatgaccaatataaatttaattaagctgttgttat |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24929685 |
gcatatataactgtaacattggccatcagtatttttgaaagacctgctagcactaacttcttttgcatgaccaatataaatttaattaagctgttgttat |
24929586 |
T |
|
| Q |
341 |
ttcggtcttttaaacataacatttgataaaactaacttaattaaatagtgtaataatctcaccatataaat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24929585 |
ttcggtcttttaaacataacatttgataaaactaacttaattaaatagtgtaataatcttaccatataaat |
24929515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 48989116 - 48989063
Alignment:
| Q |
353 |
aacataacatttgataaaactaacttaattaaatagtgtaataatctcaccata |
406 |
Q |
| |
|
|||||| || |||||||||||| |||||||||||||||| |||||||| ||||| |
|
|
| T |
48989116 |
aacataccagttgataaaactagcttaattaaatagtgtgataatctcgccata |
48989063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 46291094 - 46291009
Alignment:
| Q |
104 |
tgtctcatcaaggctctttggtgagcaaagaaata--ggagagagattaaaaatcagtgggccccatatcaatattctttctcttc |
187 |
Q |
| |
|
|||| |||||| ||| ||||||||||||||||||| |||||||||||||||| |||||| || ||||||||| ||||||||| |
|
|
| T |
46291094 |
tgtcccatcaaagctatttggtgagcaaagaaataggggagagagattaaaaacgtatgggccgcacatcaatattttttctcttc |
46291009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 32658523 - 32658446
Alignment:
| Q |
110 |
atcaaggctctttggtgagcaaagaaatagg--agagagattaaaaatcagtgggccccatatcaatattctttctct |
185 |
Q |
| |
|
||||| ||| ||||||||| |||||||||| |||||||| | ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
32658523 |
atcaaagctgtttggtgagagaagaaataggggagagagatcacaaatcagtgggtcccacatcaatattctttctct |
32658446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 33572618 - 33572518
Alignment:
| Q |
109 |
catcaaggctctttggtgagcaaagaaatagg--agagagattaaaaatcagtgggccccatatcaatattctttctcttctttggtgcgaagaaagggg |
206 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||| |||||||| ||||||||||||| |||| | |||||||||||||| | | | ||||||||||||| |
|
|
| T |
33572618 |
catcaaagctgtttggtgagagaagaaataggggagagagataaaaaatcagtgggtcccacgttaatattctttctctccatggaagcgaagaaagggg |
33572519 |
T |
|
| Q |
207 |
a |
207 |
Q |
| |
|
| |
|
|
| T |
33572518 |
a |
33572518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 5041659 - 5041742
Alignment:
| Q |
104 |
tgtctcatcaaggctctttggtgagcaaagaaatag--gagagagattaaaaatcagtgggccccatatcaatattctttctct |
185 |
Q |
| |
|
|||| |||||| ||| |||||||| ||||||||| ||||||||| ||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
5041659 |
tgtcccatcaaagctgtttggtgaaagaagaaatagaggagagagataaaaaatcagtgggtcccaagtcaatattctctctct |
5041742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University