View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_29 (Length: 414)
Name: NF7721_high_29
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 30757286 - 30757682
Alignment:
| Q |
18 |
cagtgtagtggacacttttgccgagtttttctgctataacagtataagcaacttgttcggcatttttaacttgagaatcattattaaaaaccttatctgc |
117 |
Q |
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| T |
30757286 |
cagtgtagtggacacttgtgccgagtttttatgctataacagtataagcaacttgttcggcatttttaacttgagaatcattattaacaaccttatctgc |
30757385 |
T |
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| Q |
118 |
attaagaagtgtgggggttagaagtaacagggggttcagcatgacttgttggatgatcattagcaacaatgagctcttcggtattaatcagctcaccatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
30757386 |
attaagaagtgtgggggttagaagtaacagggggttcaacatgacttgttggatgatcattagtaacgatgagctcttcggtattaatcagctcaccatg |
30757485 |
T |
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| Q |
218 |
aagcttttcctgaatatttgaagtgtcatcagtaccgaatgaaattgtggcagggatatgctcttcattcacaatggcaataaccgccttattagtaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30757486 |
aagcttttcctgaatatttgaagtgtcatcagtaccgaatgaaattgtggcagggatatgctcttcattcacaatggcaataaccgccttattagtaatt |
30757585 |
T |
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| Q |
318 |
ggtgctgcaaaagctttagaagaacctataccatcaggatctttcttttcaacatatttcagagtcatttgcttccgagcatgtgtaggtttcttct |
414 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30757586 |
ggcgctgcaaaagctttagaagaacctataccatcatgatcgttcttttcaacatatttcagagtcatttgcttccgagcatgtgtaggtttcttct |
30757682 |
T |
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