View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_34 (Length: 398)
Name: NF7721_high_34
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 55263919 - 55263569
Alignment:
| Q |
1 |
gatggctttggacattttgcaattgcaactcaagatgtaagacaagagtattctaacttcacataagcttgtgatttgtgaagagaatgaacattgtaat |
100 |
Q |
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| T |
55263919 |
gatggctttggacattttgcaattgcaactcaagatgtaagacaagagtattctaacttcacataagcttgtgatttgtgaagagaatgaacattgtaat |
55263820 |
T |
|
| Q |
101 |
taacattgcttcaatttttattttaggtttacaaattggttgagcacattcgtgctaaaggtggaaatatcacaagggaggctggtccagttcagggtgg |
200 |
Q |
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| T |
55263819 |
taacattgcttcaatttttattttaggtttacaaattggttgagcacattcgtgctaaaggtggaaatatcacaagggaggctggtccagttcaaggtgg |
55263720 |
T |
|
| Q |
201 |
gacaactgttattgcctttgtgaaggatcctgatggctacacttttgcacttgtccaaagacctatagttcacgacccattctgtcaaataagtcttcgc |
300 |
Q |
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| T |
55263719 |
gacaactgttattgcctttgtgaaggatcctgatggctacacttttgcacttgtccaaagacctatagttcacgacccattctgtcaaataagtcttcgc |
55263620 |
T |
|
| Q |
301 |
gttggtgatttagaacgtgccataaagttttatgaaaaggtaacaatcgaa |
351 |
Q |
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| T |
55263619 |
gttggtgatttagaacgtgccataaagttttatgaaaaggtaacaatcgaa |
55263569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 55270783 - 55270433
Alignment:
| Q |
1 |
gatggctttggacattttgcaattgcaactcaagatgtaagacaagagtattctaacttcacataagcttgtgatttgtgaagagaatgaacattgtaat |
100 |
Q |
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| T |
55270783 |
gatggctttggacattttgcaattgcaactcaagatgtaagacaagagtattctaacttcacataagcttgtgatttgtgaagagaatgaacattgtaat |
55270684 |
T |
|
| Q |
101 |
taacattgcttcaatttttattttaggtttacaaattggttgagcacattcgtgctaaaggtggaaatatcacaagggaggctggtccagttcagggtgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
55270683 |
taacattgcttcaatttttattttaggtttacaaattggttgagcacattcgtgctaaaggtggaaacatcacaagggaggctggtccagttcaaggtgg |
55270584 |
T |
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| Q |
201 |
gacaactgttattgcctttgtgaaggatcctgatggctacacttttgcacttgtccaaagacctatagttcacgacccattctgtcaaataagtcttcgc |
300 |
Q |
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| T |
55270583 |
gacaactgttattgcctttgtgaaggatcctgatggctacacttttgcacttgttcaaagacctatagttcacgacccattctgtcaaataagtctccgc |
55270484 |
T |
|
| Q |
301 |
gttggtgatttagaacgtgccataaagttttatgaaaaggtaacaatcgaa |
351 |
Q |
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| T |
55270483 |
gttggtgatttagaacgtgccataaagttttatgaaaaggtaacaatcgaa |
55270433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 8302632 - 8302517
Alignment:
| Q |
121 |
ttttaggtttacaaattggttgagcacattcgtgctaaaggtggaaatatcacaagggaggctggtccagttcagggtgggacaactgttattgcctttg |
220 |
Q |
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|||||||| |||||||| ||||| || || ||||| |||||||| |||| |||||| ||||||||||| || ||||||| |||||||||||||| |
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| T |
8302632 |
ttttaggtctacaaatttgttgaaaacgcccgggctaagggtggaaaagtcactagggagcctggtccagttagtggcgggacaagtgttattgcctttg |
8302533 |
T |
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| Q |
221 |
tgaaggatcctgatgg |
236 |
Q |
| |
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|| ||||||||||| |
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| T |
8302532 |
tggctgatcctgatgg |
8302517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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