View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_39 (Length: 382)
Name: NF7721_high_39
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 33658009 - 33658387
Alignment:
| Q |
1 |
ctcactttctcctgaatcaatcaagaaattgatcccttatatagaaacccaagttatttcctccttggattcttgggtttctaccggacaagttattaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33658009 |
ctcactttctcctgaatcaatcaagaaattgatcccttatatagaaacccaagttatttcctccttggattcttgggtttctaccggacaagttattaat |
33658108 |
T |
|
| Q |
101 |
gctttccatgaattgaaaaaggttattttactaagggtcgctaacgagtaccctaatgatacttattagcatttctcttttattaattgtgatcgggttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
33658109 |
gctttccatgaattgaaaaaggttattttactaagggtcgctaacgagtaccctaatgacacttattagcatttctcttttataaattgtgatcgggttc |
33658208 |
T |
|
| Q |
201 |
ttctccatcaacatattgattggtatggttgattacttgcagttctctttcaatattggtatcctctctgtctttggtaacttggaaggcaattatagag |
300 |
Q |
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| T |
33658209 |
ttctccatcaacatattgattgctatggttgattacttgcagttctctttcaatattggtatcctctctgtctttggtaacttggaaggcaattatagag |
33658308 |
T |
|
| Q |
301 |
agcagcttaaggagaattacaacatagtagagaaaggctacaattctttcccaaataggatacccggaactccatactc |
379 |
Q |
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| T |
33658309 |
agcagcttaaggagaattacaacatagtagagaaaggctacaattctttcccaaataggatacccggaactgcatactc |
33658387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 229 - 379
Target Start/End: Original strand, 33698973 - 33699123
Alignment:
| Q |
229 |
ttgattacttgcagttctctttcaatattggtatcctctctgtctttggtaacttggaaggcaattatagagagcagcttaaggagaattacaacatagt |
328 |
Q |
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||||||| | |||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
33698973 |
ttgattattggcagttctctttcaatgtcgggatcctctctgtctttggtaacttggaaggcaattatagagaacagcttaaggagaattactgcatagt |
33699072 |
T |
|
| Q |
329 |
agagaaaggctacaattctttcccaaataggatacccggaactccatactc |
379 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||| ||||||| |
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| T |
33699073 |
agagaaaggttacaattctttcccaaataagatacccggaacatcatactc |
33699123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 33698552 - 33698667
Alignment:
| Q |
9 |
ctcctgaatcaatcaagaaattgatcccttatatagaaacccaagttatttcctccttggattcttgggtttctaccggacaagttattaatgctttcca |
108 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |||| |||| |||||||| || || || |||||||||| |||||||| || || |||||||| |
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| T |
33698552 |
ctcctgaatcaatcaagaaattgatccctgatattgaaaatgaagtcatttcctcattagaatcctgggtttctattggacaagtcatcaacgctttcca |
33698651 |
T |
|
| Q |
109 |
tgaattgaaaaaggtt |
124 |
Q |
| |
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|||| ||||||||||| |
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| T |
33698652 |
tgaaatgaaaaaggtt |
33698667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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